Transcript: Mouse XM_017316111.1

PREDICTED: Mus musculus Meis homeobox 2 (Meis2), transcript variant X10, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Meis2 (17536)
Length:
3222
CDS:
629..2059

Additional Resources:

NCBI RefSeq record:
XM_017316111.1
NBCI Gene record:
Meis2 (17536)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316111.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304270 GACGGGCTCATCGAGACAATT pLKO_005 2236 3UTR 100% 13.200 18.480 N Meis2 n/a
2 TRCN0000075589 CCACGAACTATGTGATAACTT pLKO.1 1117 CDS 100% 5.625 7.875 N Meis2 n/a
3 TRCN0000301408 CCACGAACTATGTGATAACTT pLKO_005 1117 CDS 100% 5.625 7.875 N Meis2 n/a
4 TRCN0000075588 GCACCATAAGTAGGATTCTAT pLKO.1 2850 3UTR 100% 5.625 7.875 N Meis2 n/a
5 TRCN0000274057 TCTATGGGCACCCGTTGTTTC pLKO_005 864 CDS 100% 10.800 8.640 N MEIS2 n/a
6 TRCN0000310875 TCTATGGGCACCCGTTGTTTC pLKO_005 864 CDS 100% 10.800 8.640 N Meis2 n/a
7 TRCN0000348996 CAAACCCAGAGCTGGATAATT pLKO_005 1041 CDS 100% 15.000 10.500 N Meis2 n/a
8 TRCN0000075590 CCCACAATGTTAAATTCTGTA pLKO.1 1994 CDS 100% 4.950 3.465 N Meis2 n/a
9 TRCN0000301327 CCCACAATGTTAAATTCTGTA pLKO_005 1994 CDS 100% 4.950 3.465 N Meis2 n/a
10 TRCN0000016044 CCCATGATTGACCAGTCAAAT pLKO.1 1634 CDS 100% 13.200 7.920 N MEIS2 n/a
11 TRCN0000274060 CCCATGATTGACCAGTCAAAT pLKO_005 1634 CDS 100% 13.200 7.920 N MEIS2 n/a
12 TRCN0000075592 CCGGTACATTAGCTGTTTGAA pLKO.1 1144 CDS 100% 5.625 3.375 N Meis2 n/a
13 TRCN0000075591 CCACCGGTACATTAGCTGTTT pLKO.1 1141 CDS 100% 4.950 2.970 N Meis2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316111.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00998 pDONR223 100% 93% 97.2% None (many diffs) n/a
2 ccsbBroad304_00998 pLX_304 0% 93% 97.2% V5 (many diffs) n/a
3 TRCN0000465719 ACTGCGGCTGATCAGATCCCCAGG pLX_317 23% 93% 97.2% V5 (many diffs) n/a
4 ccsbBroadEn_00999 pDONR223 100% 74.3% 77.7% None (many diffs) n/a
5 ccsbBroad304_00999 pLX_304 0% 74.3% 77.7% V5 (many diffs) n/a
6 TRCN0000470691 ACACACCCAATCGGACACGTGCAG pLX_317 35% 74.3% 77.7% V5 (many diffs) n/a
Download CSV