Transcript: Mouse XM_011247159.2

PREDICTED: Mus musculus X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Xpnpep1 (170750)
Length:
2399
CDS:
118..1989

Additional Resources:

NCBI RefSeq record:
XM_011247159.2
NBCI Gene record:
Xpnpep1 (170750)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247159.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428268 AGACGATCATGCTCTTCATTG pLKO_005 809 CDS 100% 10.800 15.120 N XPNPEP1 n/a
2 TRCN0000031934 GCTCACATTAAAGATGCCGTT pLKO.1 1114 CDS 100% 2.160 3.024 N Xpnpep1 n/a
3 TRCN0000031935 CGAGATTGCATGGCTGTTCAA pLKO.1 726 CDS 100% 4.950 3.465 N Xpnpep1 n/a
4 TRCN0000324858 CGAGATTGCATGGCTGTTCAA pLKO_005 726 CDS 100% 4.950 3.465 N Xpnpep1 n/a
5 TRCN0000031938 TGTGGGATTCTGGTCTGGATT pLKO.1 1544 CDS 100% 4.950 3.465 N Xpnpep1 n/a
6 TRCN0000324856 TGTGGGATTCTGGTCTGGATT pLKO_005 1544 CDS 100% 4.950 3.465 N Xpnpep1 n/a
7 TRCN0000031937 CACAGATTACTGGAAGAAGAT pLKO.1 492 CDS 100% 4.950 2.970 N Xpnpep1 n/a
8 TRCN0000324770 CACAGATTACTGGAAGAAGAT pLKO_005 492 CDS 100% 4.950 2.970 N Xpnpep1 n/a
9 TRCN0000031936 GCCTGACCTTTGAACCTCTAA pLKO.1 1784 CDS 100% 4.950 2.970 N Xpnpep1 n/a
10 TRCN0000324857 GCCTGACCTTTGAACCTCTAA pLKO_005 1784 CDS 100% 4.950 2.970 N Xpnpep1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247159.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11222 pDONR223 100% 88.1% 95.8% None (many diffs) n/a
2 ccsbBroad304_11222 pLX_304 0% 88.1% 95.8% V5 (many diffs) n/a
3 TRCN0000470726 CTGCACAGCCGGGGGATGACAACG pLX_317 24.4% 88.1% 95.8% V5 (many diffs) n/a
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