Transcript: Human XM_017019736.2

PREDICTED: Homo sapiens paxillin (PXN), transcript variant X17, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PXN (5829)
Length:
4430
CDS:
317..2563

Additional Resources:

NCBI RefSeq record:
XM_017019736.2
NBCI Gene record:
PXN (5829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017019736.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000293921 TGAGCCTTCACCCACCGTAAT pLKO_005 715 CDS 100% 10.800 15.120 N PXN n/a
2 TRCN0000123134 CCCGACCTAATTGTCTTTGTT pLKO.1 2976 3UTR 100% 5.625 4.500 N PXN n/a
3 TRCN0000286554 CCCGACCTAATTGTCTTTGTT pLKO_005 2976 3UTR 100% 5.625 4.500 N PXN n/a
4 TRCN0000123138 ACCCAACTGGAAACCACACAT pLKO.1 432 CDS 100% 4.950 3.960 N PXN n/a
5 TRCN0000286555 ACCCAACTGGAAACCACACAT pLKO_005 432 CDS 100% 4.950 3.960 N PXN n/a
6 TRCN0000123135 CCTGACGAAAGAGAAGCCTAA pLKO.1 922 CDS 100% 4.050 3.240 N PXN n/a
7 TRCN0000293920 GGCCATCCTGGAGAACTATAT pLKO_005 2230 CDS 100% 13.200 9.240 N PXN n/a
8 TRCN0000123136 CCCAACTGGAAACCACACATA pLKO.1 433 CDS 100% 4.950 3.465 N PXN n/a
9 TRCN0000123137 GCCTTACTGTCAGAACTGCTT pLKO.1 2524 CDS 100% 2.640 1.848 N PXN n/a
10 TRCN0000286485 GCCTTACTGTCAGAACTGCTT pLKO_005 2524 CDS 100% 2.640 1.848 N PXN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017019736.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06826 pDONR223 100% 74.2% 73.6% None (many diffs) n/a
2 ccsbBroad304_06826 pLX_304 0% 74.2% 73.6% V5 (many diffs) n/a
3 TRCN0000477826 GCCAGAAGTTGGATACTCGACTGT pLX_317 18.8% 74.2% 73.6% V5 (many diffs) n/a
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