Construct: ORF TRCN0000477826

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016487.1_s317c1
Derived from:
ccsbBroadEn_06826
DNA Barcode:
GCCAGAAGTTGGATACTCGACTGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PXN (5829)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477826
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5829 PXN paxillin NM_002859.4 99.8% 99.6% 217A>G;1661A>G
2 human 5829 PXN paxillin XM_017019742.2 98.6% 97.8% (many diffs)
3 human 5829 PXN paxillin NM_001080855.3 94.1% 93.9% 217A>G;831_932del;1763A>G
4 human 5829 PXN paxillin XM_024449109.1 93.6% 93.2% (many diffs)
5 human 5829 PXN paxillin XM_017019740.2 93% 92.2% (many diffs)
6 human 5829 PXN paxillin NM_001243756.1 91.9% 91.7% 217A>G;830_973del;1805A>G
7 human 5829 PXN paxillin XM_017019739.2 90.9% 90.1% (many diffs)
8 human 5829 PXN paxillin XM_017019738.2 86.1% 85.4% (many diffs)
9 human 5829 PXN paxillin XM_017019737.2 79.3% 78.7% (many diffs)
10 human 5829 PXN paxillin NM_025157.5 76% 75.9% 0_1ins399;1262A>G
11 human 5829 PXN paxillin XM_017019743.1 76% 75.9% 0_1ins399;1262A>G
12 human 5829 PXN paxillin XM_017019736.2 74.2% 73.6% (many diffs)
13 human 5829 PXN paxillin XM_017019735.2 64.7% 64.2% (many diffs)
14 human 5829 PXN paxillin XM_005253917.3 64.1% 52.3% (many diffs)
15 human 5829 PXN paxillin XM_024449110.1 60.8% 49.8% (many diffs)
16 human 5829 PXN paxillin XM_017019733.2 59.1% 58.6% (many diffs)
17 human 5829 PXN paxillin XM_017019734.1 51.6% 40.7% (many diffs)
18 human 5829 PXN paxillin XM_017019729.2 51.1% 50.6% (many diffs)
19 human 5829 PXN paxillin XM_006719532.2 49.2% 49.1% 217A>G;830_2545del;3377A>G
20 human 5829 PXN paxillin XM_024449107.1 49% 48.7% (many diffs)
21 human 5829 PXN paxillin XM_024449108.1 49% 48.8% (many diffs)
22 human 5829 PXN paxillin XM_017019726.2 48.9% 48.5% (many diffs)
23 human 5829 PXN paxillin XM_017019730.2 41.9% 41% (many diffs)
24 human 5829 PXN paxillin XM_006719534.1 37.5% 37.4% 0_1ins399;431_2146del;2978A>G
25 human 5829 PXN paxillin XM_006719535.4 37.5% 37.4% 0_1ins399;431_2146del;2978A>G
26 human 5829 PXN paxillin XM_006719536.3 37.5% 37.4% 0_1ins399;431_2146del;2978A>G
27 human 5829 PXN paxillin XM_011538622.1 37.5% 37.4% 0_1ins399;431_2146del;2978A>G
28 human 5829 PXN paxillin XM_011538623.1 37.5% 37.4% 0_1ins399;431_2146del;2978A>G
29 human 5829 PXN paxillin XR_002957365.1 34.2% (many diffs)
30 mouse 19303 Pxn paxillin NM_011223.3 89.1% 94.9% (many diffs)
31 mouse 19303 Pxn paxillin NM_133915.3 84% 89.5% (many diffs)
32 mouse 19303 Pxn paxillin XM_006530204.2 46.1% 37.6% (many diffs)
33 mouse 19303 Pxn paxillin XM_006530205.2 46.1% 37.6% (many diffs)
34 mouse 19303 Pxn paxillin XM_006530202.3 45.6% 48.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1740
ORF length:
1671
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggacgacctc gacgccctgc tggcggactt ggagtctacc acctcccaca
121tctccaaacg gcctgtgttc ttgtcggagg agacccccta ctcataccca actggaaacc
181acacatacca ggagattgcc gtgccacccc ccgtcccccc acccccgtcc agcgaggccc
241tcaatggcac aatccttgac cccttagacc agtggcagcc cagcggctcc cgattcatcc
301accagcagcc tcagtcctca tcacctgtgt acggctccag tgccaaaact tccagtgtct
361ccaaccctca ggacagtgtt ggctctccgt gctcccgagt gggtgaggag gagcacgtct
421acagcttccc caacaagcag aaatcagctg agccttcacc caccgtaatg agcacgtccc
481tgggcagcaa cctttctgaa ctcgaccgcc tgctgctgga actgaacgct gtacagcata
541acccgccagg cttccctgca gatgaggcca actcaagccc cccgcttcct ggggccctga
601gccccctcta tggtgtccca gagactaaca gccccttggg aggcaaagct gggcccctga
661cgaaagagaa gcctaagcgg aatgggggcc ggggcctgga ggacgtgcgg cccagtgtgg
721agagtctctt ggatgaactg gagagctccg tgcccagccc cgtccctgcc atcactgtga
781accagggcga gatgagcagc ccgcagcgcg tcacctccac ccaacagcag acacgcatct
841cggcctcctc tgccaccagg gagctggacg agctgatggc ttcgctgtcg gatttcaagt
901tcatggccca ggggaagaca gggagcagct caccccctgg ggggcccccg aagcccggga
961gccagctgga cagcatgctg gggagcctgc agtctgacct gaacaagctg ggggtcgcca
1021cagtcgccaa aggagtctgc ggggcctgca agaagcccat cgccgggcag gttgtgaccg
1081ccatggggaa gacgtggcac cccgagcact tcgtctgcac ccactgccag gaggagatcg
1141gatcccggaa cttcttcgag cgggatggac agccctactg tgaaaaggac taccacaacc
1201tcttctcccc gcgctgctac tactgcaacg gccccatcct ggataaagtg gtgacagccc
1261ttgaccggac gtggcaccct gaacacttct tctgtgcaca gtgtggagcc ttctttggtc
1321ccgaagggtt ccacgagaag gacggcaagg cctactgtcg caaggactac ttcgacatgt
1381tcgcacccaa gtgtggcggc tgcgcccggg ccatcctgga gaactatatc TCAGCCCTCA
1441ACACGCTGTG GCATCCTGAG TGCTTTGTGT GCCGGGAATG CTTCACGCCA TTCGTGAACG
1501GCAGCTTCTT CGAGCACGAC GGGCAGCCCT ACTGTGAGGT GCACTACCAC GAGCGGCGCG
1561GCTCGCTGTG TTCTGGCTGC CAGAAGCCCA TCACCGGCCG CTGCATCACC GCCATGGCCA
1621AGAAGTTCCA CCCCGAGCAC TTCGTCTGTG CCTTCTGCCT CAAGCAGCTC AACAAGGGCA
1681CCTTCAAGGA GCAGAACGAC AAGCCTTACT GTCAGAACTG CTTCCTCAGG CTCTTCTGCT
1741TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1801GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1861TTTATATATC TTGTGGAAAG GACGAGCCAG AAGTTGGATA CTCGACTGTA CGCGTTAAGT
1921Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)