Transcript: Human NR_104405.2

Homo sapiens myelin protein zero like 3 (MPZL3), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
MPZL3 (196264)
Length:
3772
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104405.2
NBCI Gene record:
MPZL3 (196264)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104405.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414102 GGACCATAGCGATGGACAATC pLKO_005 664 3UTR 100% 10.800 15.120 N MPZL3 n/a
2 TRCN0000426020 TGTTCTTCCAGGGTGTTTATA pLKO_005 133 3UTR 100% 15.000 10.500 N MPZL3 n/a
3 TRCN0000167873 GAGATCATCAGTAAAGACTTT pLKO.1 688 3UTR 100% 4.950 3.465 N MPZL3 n/a
4 TRCN0000167937 CCAGGGTGTTTATATCGTCTT pLKO.1 140 3UTR 100% 4.050 2.835 N MPZL3 n/a
5 TRCN0000137304 GAGTCACCTAAAGACAGGAAA pLKO.1 592 3UTR 100% 4.950 2.970 N MPZL3 n/a
6 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 1570 3UTR 100% 1.080 0.540 Y GPR83 n/a
7 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 1570 3UTR 100% 1.080 0.540 Y MYORG n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104405.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11616 pDONR223 100% 4.5% None (many diffs) n/a
2 ccsbBroad304_11616 pLX_304 0% 4.5% V5 (many diffs) n/a
3 TRCN0000467678 CCTCCCCTCACACCTCGTCAAAAC pLX_317 100% 4.5% V5 (many diffs) n/a
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