Transcript: Human XM_017019144.2

PREDICTED: Homo sapiens MGAT4 family member C (MGAT4C), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MGAT4C (25834)
Length:
1666
CDS:
86..1636

Additional Resources:

NCBI RefSeq record:
XM_017019144.2
NBCI Gene record:
MGAT4C (25834)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017019144.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425974 TGGACTTCTTAGCCAATTAAA pLKO_005 1625 CDS 100% 15.000 21.000 N MGAT4C n/a
2 TRCN0000424315 TTTCAGCACATGGGCTATTAT pLKO_005 1124 CDS 100% 15.000 21.000 N MGAT4C n/a
3 TRCN0000036356 CCAATCCTAGATGGCCTTAAA pLKO.1 737 CDS 100% 13.200 18.480 N MGAT4C n/a
4 TRCN0000431674 GGCTAATTATTAGGAGTATTA pLKO_005 1599 CDS 100% 13.200 18.480 N MGAT4C n/a
5 TRCN0000036354 CGCACCATATTATTGCAGGAA pLKO.1 681 CDS 100% 2.640 3.696 N MGAT4C n/a
6 TRCN0000412490 GCCAATACTTCAGACTATTAT pLKO_005 839 CDS 100% 15.000 10.500 N MGAT4C n/a
7 TRCN0000416652 ACATGCTCCAGAGGAGTATTA pLKO_005 715 CDS 100% 13.200 9.240 N MGAT4C n/a
8 TRCN0000036358 CCACCTTCAACAGGAGATGTT pLKO.1 1313 CDS 100% 4.950 3.465 N MGAT4C n/a
9 TRCN0000036355 CCTAGCAAACAAAGGAGACAA pLKO.1 1454 CDS 100% 4.950 3.465 N MGAT4C n/a
10 TRCN0000036357 GTGTCATTCTTGGGAGTTCTT pLKO.1 275 CDS 100% 4.950 3.465 N MGAT4C n/a
11 TRCN0000193633 CCTAGAAGGAACTTACTGGAA pLKO.1 928 CDS 100% 2.640 1.584 N Phactr3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017019144.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07949 pDONR223 100% 92.5% 92.4% None 1_114del;1397C>G n/a
2 ccsbBroad304_07949 pLX_304 0% 92.5% 92.4% V5 1_114del;1397C>G n/a
3 TRCN0000477425 GGGGGGGACAGCACGACATCACTG pLX_317 22.7% 92.5% 92.4% V5 1_114del;1397C>G n/a
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