Transcript: Human NM_003417.5

Homo sapiens zinc finger protein 264 (ZNF264), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ZNF264 (9422)
Length:
12163
CDS:
415..2298

Additional Resources:

NCBI RefSeq record:
NM_003417.5
NBCI Gene record:
ZNF264 (9422)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003417.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234863 CCTCATTCGACATGCCATTAT pLKO_005 1989 CDS 100% 13.200 18.480 N ZNF264 n/a
2 TRCN0000019143 ACCTCATTCGACATGCCATTA pLKO.1 1988 CDS 100% 10.800 15.120 N ZNF264 n/a
3 TRCN0000234861 GATAGAGTCCGTAGCCATAAC pLKO_005 952 CDS 100% 10.800 15.120 N ZNF264 n/a
4 TRCN0000234862 TGGCCAAGTCTTTCGACATAG pLKO_005 1374 CDS 100% 10.800 8.640 N ZNF264 n/a
5 TRCN0000019140 CCTCTGCATCTGATCAACCAT pLKO.1 2243 CDS 100% 3.000 2.400 N ZNF264 n/a
6 TRCN0000234865 GTCATCTGAAGAGTCATATTA pLKO_005 2327 3UTR 100% 15.000 10.500 N ZNF264 n/a
7 TRCN0000019142 GAGCCCTGAATGTGATGGTTT pLKO.1 876 CDS 100% 4.950 3.465 N ZNF264 n/a
8 TRCN0000019139 CCAGGCTTTCTCCGGCACTAT pLKO.1 1396 CDS 100% 1.650 1.155 N ZNF264 n/a
9 TRCN0000234864 GTAACCACTGAGGCAAATATT pLKO_005 2203 CDS 100% 15.000 9.000 N ZNF264 n/a
10 TRCN0000234230 ACTGGAGAGAAGCCCTATAAA pLKO_005 2014 CDS 100% 15.000 7.500 Y EG666702 n/a
11 TRCN0000019141 TCAGGTAAAGATCCCATGATT pLKO.1 982 CDS 100% 5.625 2.813 Y ZNF264 n/a
12 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 5407 3UTR 100% 4.950 2.475 Y DENND6A n/a
13 TRCN0000107803 GCGGATTCATAGTGGAGAGAA pLKO.1 1920 CDS 100% 4.950 2.475 Y ZNF805 n/a
14 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 11442 3UTR 100% 4.050 2.025 Y P3H4 n/a
15 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 11442 3UTR 100% 4.050 2.025 Y ORAI2 n/a
16 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 11442 3UTR 100% 4.050 2.025 Y P3H4 n/a
17 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3927 3UTR 100% 5.625 2.813 Y KLHL30 n/a
18 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 3854 3UTR 100% 4.950 2.475 Y n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3927 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003417.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07414 pDONR223 100% 99.8% 99.6% None 542G>C;548G>A n/a
2 ccsbBroad304_07414 pLX_304 0% 99.8% 99.6% V5 542G>C;548G>A n/a
3 TRCN0000466958 TGCTAACGTTGTCCTTGTTTGCCC pLX_317 18.3% 99.8% 99.6% V5 542G>C;548G>A n/a
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