Transcript: Human XM_005259393.3

PREDICTED: Homo sapiens FA core complex associated protein 24 (FAAP24), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAAP24 (91442)
Length:
1551
CDS:
220..738

Additional Resources:

NCBI RefSeq record:
XM_005259393.3
NBCI Gene record:
FAAP24 (91442)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005259393.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285281 ACCCGGATGAGTGAACAATAC pLKO_005 370 CDS 100% 10.800 15.120 N FAAP24 n/a
2 TRCN0000134000 CAACTGAGTAATGCTTCCATT pLKO.1 646 CDS 100% 4.950 3.465 N FAAP24 n/a
3 TRCN0000136865 CACAAACACCAGGATCTTGTT pLKO.1 776 3UTR 100% 4.950 3.465 N FAAP24 n/a
4 TRCN0000137633 GACCACAAACACCAGGATCTT pLKO.1 773 3UTR 100% 4.950 3.465 N FAAP24 n/a
5 TRCN0000137740 GAAAGAGGCTTGTTCGGGTTA pLKO.1 308 CDS 100% 4.050 2.835 N FAAP24 n/a
6 TRCN0000275043 GAAAGAGGCTTGTTCGGGTTA pLKO_005 308 CDS 100% 4.050 2.835 N FAAP24 n/a
7 TRCN0000138659 CCAGAAGTTTCCAAGCATCCA pLKO.1 624 CDS 100% 2.640 1.848 N FAAP24 n/a
8 TRCN0000138729 GAAGTTTACTGTGCTGGACCT pLKO.1 405 CDS 100% 2.160 1.296 N FAAP24 n/a
9 TRCN0000141556 CGAGACTCCGTCTCAAAGAAA pLKO.1 1083 3UTR 100% 5.625 2.813 Y AGMO n/a
10 TRCN0000138644 CGCCTCTAATCTCAGCACTTT pLKO.1 841 3UTR 100% 4.950 2.475 Y FAAP24 n/a
11 TRCN0000275042 CGCCTCTAATCTCAGCACTTT pLKO_005 841 3UTR 100% 4.950 2.475 Y FAAP24 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005259393.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04545 pDONR223 100% 80% 72.1% None 0_1ins71;33_34ins58 n/a
2 ccsbBroad304_04545 pLX_304 0% 80% 72.1% V5 0_1ins71;33_34ins58 n/a
3 TRCN0000467120 TAATGTATCAATGAGGATACCAAA pLX_317 58.9% 80% 72.1% V5 0_1ins71;33_34ins58 n/a
4 ccsbBroadEn_16063 pDONR223 0% 79.6% 72.1% None (many diffs) n/a
5 ccsbBroad304_16063 pLX_304 0% 79.6% 72.1% V5 (many diffs) n/a
6 TRCN0000472727 GCCTCAGACCGTAGCTCCGGCTCA pLX_317 48.1% 79.6% 72.1% V5 (many diffs) n/a
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