Transcript: Human XM_005262335.3

PREDICTED: Homo sapiens MAGE family member A9 (MAGEA9), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MAGEA9 (4108)
Length:
1734
CDS:
210..1157

Additional Resources:

NCBI RefSeq record:
XM_005262335.3
NBCI Gene record:
MAGEA9 (4108)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005262335.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122743 CCCATTCTTCGCTCTGTGTTT pLKO.1 1236 3UTR 100% 4.950 2.970 N MAGEA9 n/a
2 TRCN0000262185 CATTTCCTGCTCCACAAATAT pLKO_005 558 CDS 100% 15.000 7.500 Y MAGEA9B n/a
3 TRCN0000262183 TTGGGTGATTTGGAGATTTAT pLKO_005 1334 3UTR 100% 15.000 7.500 Y MAGEA9B n/a
4 TRCN0000262184 ATTTCCGTCTACTACACTTTA pLKO_005 414 CDS 100% 13.200 6.600 Y MAGEA9B n/a
5 TRCN0000282137 GCCGGTCACAAAGGCAGAAAT pLKO_005 590 CDS 100% 13.200 6.600 Y MAGEA9B n/a
6 TRCN0000282136 CATGCTGGGTGATGGTCATAG pLKO_005 770 CDS 100% 10.800 5.400 Y MAGEA9B n/a
7 TRCN0000145532 CATTTCCGTCTACTACACTTT pLKO.1 413 CDS 100% 4.950 2.475 Y MAGEA9 n/a
8 TRCN0000121513 CGAAGTTAATGAATGACAGTA pLKO.1 1418 3UTR 100% 4.950 2.475 Y MAGEA9 n/a
9 TRCN0000141243 CGCTGAAACCAGCTATGAGAA pLKO.1 1040 CDS 100% 4.950 2.475 Y MAGEA9 n/a
10 TRCN0000122326 CTCCTCCATTTCCGTCTACTA pLKO.1 407 CDS 100% 4.950 2.475 Y MAGEA9 n/a
11 TRCN0000128375 GAATGACAGTAGTCACACATA pLKO.1 1428 3UTR 100% 4.950 2.475 Y MAGEA3 n/a
12 TRCN0000141822 GCGCTACTTTCCTGTGATCTT pLKO.1 638 CDS 100% 4.950 2.475 Y MAGEA9 n/a
13 TRCN0000139290 CAAAGGCAGAAATGCTGGAGA pLKO.1 598 CDS 100% 2.640 1.320 Y MAGEA4 n/a
14 TRCN0000145531 CAAGATAACATAGCAGAGGAA pLKO.1 1528 3UTR 100% 2.640 1.320 Y MAGEA9 n/a
15 TRCN0000141889 GATGAAGACCTTGAAGCCCAA pLKO.1 246 CDS 100% 2.160 1.080 Y MAGEA9 n/a
16 TRCN0000142096 GCACTGAAATTGAAGGTGGCT pLKO.1 528 CDS 100% 0.660 0.330 Y MAGEA9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005262335.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00968 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00968 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471282 AAGCCCGACTCCATTGTAATTATA pLX_317 44.5% 100% 100% V5 n/a
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