Transcript: Human XM_005277402.4

PREDICTED: Homo sapiens G protein-coupled receptor 89B (GPR89B), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GPR89B (51463)
Length:
2255
CDS:
357..1649

Additional Resources:

NCBI RefSeq record:
XM_005277402.4
NBCI Gene record:
GPR89B (51463)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005277402.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244549 CTTCATTCTTGTTGGAATAAT pLKO_005 1313 CDS 100% 15.000 7.500 Y GPR89B n/a
2 TRCN0000243822 GAATAGCAGCTCCCGTTATTT pLKO_005 479 CDS 100% 15.000 7.500 Y GPR89A n/a
3 TRCN0000244548 TTCATGGCTACCATCAATATT pLKO_005 1185 CDS 100% 15.000 7.500 Y GPR89B n/a
4 TRCN0000243824 ATGTGACTGACACGGATATTC pLKO_005 820 CDS 100% 13.200 6.600 Y GPR89A n/a
5 TRCN0000014506 CCTGCTATTAGCACAGATAAT pLKO.1 1421 CDS 100% 13.200 6.600 Y GPR89B n/a
6 TRCN0000014504 CCTTCATTCTTGTTGGAATAA pLKO.1 1312 CDS 100% 13.200 6.600 Y GPR89B n/a
7 TRCN0000244550 TCTGGAAACAGCTGATCTATA pLKO_005 1067 CDS 100% 13.200 6.600 Y GPR89B n/a
8 TRCN0000363142 TGAATAGCAGCTCCCGTTATT pLKO_005 478 CDS 100% 13.200 6.600 Y GPR89B n/a
9 TRCN0000243825 TGGAACCAGGGCCTGACATTT pLKO_005 1717 3UTR 100% 13.200 6.600 Y GPR89A n/a
10 TRCN0000244551 TTAGAATACCGCACCATAATC pLKO_005 1491 CDS 100% 13.200 6.600 Y GPR89B n/a
11 TRCN0000243821 ACTATGAGATACGTCAGTATG pLKO_005 376 CDS 100% 10.800 5.400 Y GPR89A n/a
12 TRCN0000358303 CAATATCCGACTACTGCATAA pLKO_005 581 CDS 100% 10.800 5.400 Y GPR89B n/a
13 TRCN0000244552 TGAGCCAAACACGTAGGATTT pLKO_005 1979 3UTR 100% 10.800 5.400 Y GPR89B n/a
14 TRCN0000014505 CGCCAATTGTTTAAAGACTAT pLKO.1 360 CDS 100% 4.950 2.475 Y GPR89B n/a
15 TRCN0000014507 CGCTCTCTCTAGCATACTCTT pLKO.1 1580 CDS 100% 4.950 2.475 Y GPR89B n/a
16 TRCN0000014503 GCCAAGAAACTAAAGGTGAAA pLKO.1 1918 3UTR 100% 4.950 2.475 Y GPR89B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005277402.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14517 pDONR223 100% 94.5% .9% None 0_1ins74 n/a
2 ccsbBroad304_14517 pLX_304 0% 94.5% .9% V5 (not translated due to prior stop codon) 0_1ins74 n/a
3 TRCN0000479192 GTTGGTCCATCTGCCGAGCCGACT pLX_317 29.6% 94.5% .9% V5 (not translated due to prior stop codon) 0_1ins74 n/a
4 TRCN0000489448 TTCGCTAATGTGAAGCACCGCCCG pLX_317 23.4% 94.4% 94.2% V5 0_1ins75;1290_1291insG n/a
Download CSV