Transcript: Mouse XM_006499667.3

PREDICTED: Mus musculus transformation related protein 53 binding protein 1 (Trp53bp1), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Trp53bp1 (27223)
Length:
8844
CDS:
529..5259

Additional Resources:

NCBI RefSeq record:
XM_006499667.3
NBCI Gene record:
Trp53bp1 (27223)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006499667.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081780 CCGCGTCATCACAGATGTTTA pLKO.1 3093 CDS 100% 13.200 18.480 N Trp53bp1 n/a
2 TRCN0000321584 CTATTGGGATTAGCAACTATC pLKO_005 2135 CDS 100% 10.800 15.120 N Trp53bp1 n/a
3 TRCN0000081778 GCTATTGTGGAGATTGTGTTT pLKO.1 5290 3UTR 100% 4.950 6.930 N Trp53bp1 n/a
4 TRCN0000081781 GCGTAGAAGATATTTCACCTA pLKO.1 3602 CDS 100% 2.640 3.696 N Trp53bp1 n/a
5 TRCN0000321527 CAAGTCCTTCACCCGCATTAT pLKO_005 3639 CDS 100% 13.200 10.560 N Trp53bp1 n/a
6 TRCN0000081779 CCTCCTTTCAACAAGCAGTAT pLKO.1 4645 CDS 100% 4.950 3.960 N Trp53bp1 n/a
7 TRCN0000018865 GATACTTGGTCTTACTGGTTT pLKO.1 5261 3UTR 100% 4.950 3.960 N TP53BP1 n/a
8 TRCN0000229640 GATACTTGGTCTTACTGGTTT pLKO_005 5261 3UTR 100% 4.950 3.960 N TP53BP1 n/a
9 TRCN0000350573 TGAATGGACAGTGACTATAAA pLKO_005 5757 3UTR 100% 15.000 10.500 N Trp53bp1 n/a
10 TRCN0000321586 TGCCTAAAGAAGGTGATATTA pLKO_005 2042 CDS 100% 15.000 10.500 N Trp53bp1 n/a
11 TRCN0000081782 CGCGTCATCACAGATGTTTAT pLKO.1 3094 CDS 100% 13.200 9.240 N Trp53bp1 n/a
12 TRCN0000018866 CCAGTGTGATTAGTATTGATT pLKO.1 1484 CDS 100% 5.625 3.938 N TP53BP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006499667.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000465716 CCCGCTAGCACTCTAGGATCTGGA pLX_317 5.5% 67.4% .1% V5 (not translated due to prior stop codon) (many diffs) n/a
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