Transcript: Mouse XM_006506429.3

PREDICTED: Mus musculus lysine-rich coiled-coil 1 (Krcc1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Krcc1 (57896)
Length:
1797
CDS:
462..1232

Additional Resources:

NCBI RefSeq record:
XM_006506429.3
NBCI Gene record:
Krcc1 (57896)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506429.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000248466 ACCCGAGATGTATCATCTAAG pLKO_005 1116 CDS 100% 10.800 15.120 N Krcc1 n/a
2 TRCN0000192658 GCTGTGGTAGTGGACTTATTT pLKO.1 1479 3UTR 100% 15.000 12.000 N Krcc1 n/a
3 TRCN0000248462 GCTGTGGTAGTGGACTTATTT pLKO_005 1479 3UTR 100% 15.000 12.000 N Krcc1 n/a
4 TRCN0000248463 TCAAGTCAGTCATAGACAAAT pLKO_005 902 CDS 100% 13.200 9.240 N Krcc1 n/a
5 TRCN0000144798 GACCAGTCTATTCTTGGATTT pLKO.1 1209 CDS 100% 10.800 7.560 N KRCC1 n/a
6 TRCN0000216463 GACCAGTCTATTCTTGGATTT pLKO.1 1209 CDS 100% 10.800 7.560 N Krcc1 n/a
7 TRCN0000343768 GACCAGTCTATTCTTGGATTT pLKO_005 1209 CDS 100% 10.800 7.560 N KRCC1 n/a
8 TRCN0000192230 CCTCAAGTCAGTCATAGACAA pLKO.1 900 CDS 100% 4.950 3.465 N Krcc1 n/a
9 TRCN0000191799 GCATTCATATTCATGTCACTT pLKO.1 1292 3UTR 100% 4.950 3.465 N Krcc1 n/a
10 TRCN0000248464 TACCAGCTCATGACAAGATAA pLKO_005 724 CDS 100% 0.000 0.000 N Krcc1 n/a
11 TRCN0000248465 ATACAATTGTGGCTCATATAG pLKO_005 827 CDS 100% 13.200 7.920 N Krcc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506429.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03281 pDONR223 100% 84.2% 73.7% None (many diffs) n/a
2 ccsbBroad304_03281 pLX_304 0% 84.2% 73.7% V5 (many diffs) n/a
3 TRCN0000465290 CTCATCTTCGCTGTGGTCCTGTTG pLX_317 45.7% 84.2% 73.7% V5 (many diffs) n/a
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