Transcript: Mouse XM_006511400.1

PREDICTED: Mus musculus ELOVL family member 5, elongation of long chain fatty acids (yeast) (Elovl5), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Elovl5 (68801)
Length:
2738
CDS:
128..1027

Additional Resources:

NCBI RefSeq record:
XM_006511400.1
NBCI Gene record:
Elovl5 (68801)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511400.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126313 CGCGGGAGAATCCGATATGAA pLKO.1 430 CDS 100% 5.625 7.875 N Elovl5 n/a
2 TRCN0000126310 GACAATTACATCCCTACGTTT pLKO.1 215 CDS 100% 4.950 6.930 N Elovl5 n/a
3 TRCN0000317822 GACAATTACATCCCTACGTTT pLKO_005 215 CDS 100% 4.950 6.930 N Elovl5 n/a
4 TRCN0000153284 GATTTCCCTGATTGCTCTCTT pLKO.1 844 CDS 100% 4.950 3.960 N ELOVL5 n/a
5 TRCN0000343426 GATTTCCCTGATTGCTCTCTT pLKO_005 844 CDS 100% 4.950 3.960 N ELOVL5 n/a
6 TRCN0000126309 GCCCAGAGCTTGTTAGTTTAA pLKO.1 1464 3UTR 100% 13.200 9.240 N Elovl5 n/a
7 TRCN0000317892 GCCCAGAGCTTGTTAGTTTAA pLKO_005 1464 3UTR 100% 13.200 9.240 N Elovl5 n/a
8 TRCN0000314047 CTGTTATTTACTTACTCATTG pLKO_005 243 CDS 100% 10.800 7.560 N Elovl5 n/a
9 TRCN0000314097 TCCTCATGTACTCGTACTATG pLKO_005 660 CDS 100% 10.800 7.560 N Elovl5 n/a
10 TRCN0000126311 GTCCTCATGTACTCGTACTAT pLKO.1 659 CDS 100% 5.625 3.938 N Elovl5 n/a
11 TRCN0000126312 GCTGTCTCTCTACATGTTCTA pLKO.1 349 CDS 100% 4.950 3.465 N Elovl5 n/a
12 TRCN0000317823 GCTGTCTCTCTACATGTTCTA pLKO_005 349 CDS 100% 4.950 3.465 N Elovl5 n/a
13 TRCN0000150504 GTACTACTTCTCCAAACTCAT pLKO.1 472 CDS 100% 4.950 2.970 N ELOVL5 n/a
14 TRCN0000343425 GTACTACTTCTCCAAACTCAT pLKO_005 472 CDS 100% 4.950 2.970 N ELOVL5 n/a
15 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1945 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511400.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03885 pDONR223 100% 87.3% 92.9% None (many diffs) n/a
2 TRCN0000465403 TCTTATTACGTTTGTAATGTCAAA pLX_317 34.6% 87.3% 92.9% V5 (many diffs) n/a
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