Transcript: Mouse XM_006513811.3

PREDICTED: Mus musculus solute carrier family 41, member 2 (Slc41a2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc41a2 (338365)
Length:
5724
CDS:
1286..3007

Additional Resources:

NCBI RefSeq record:
XM_006513811.3
NBCI Gene record:
Slc41a2 (338365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006513811.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328194 CCGCGCTTCTTGGTCTTAAAG pLKO_005 1887 CDS 100% 13.200 18.480 N Slc41a2 n/a
2 TRCN0000353344 GTTCACCCTGACTCCGTAAAT pLKO_005 3119 3UTR 100% 13.200 18.480 N Slc41a2 n/a
3 TRCN0000217762 CTCCTGTCTTGAGACATATTA pLKO.1 2302 CDS 100% 15.000 12.000 N Slc41a2 n/a
4 TRCN0000174039 CGCTGGCTTCTCGATTATCTA pLKO.1 1923 CDS 100% 5.625 4.500 N Slc41a2 n/a
5 TRCN0000328131 CGCTGGCTTCTCGATTATCTA pLKO_005 1923 CDS 100% 5.625 4.500 N Slc41a2 n/a
6 TRCN0000328132 CTGATAACTCTCGCCATATTA pLKO_005 2258 CDS 100% 15.000 10.500 N Slc41a2 n/a
7 TRCN0000175192 CCAGTTACTTAACTCACAATA pLKO.1 3481 3UTR 100% 13.200 9.240 N Slc41a2 n/a
8 TRCN0000175114 GCTGTGGTTTAGAGTTGTATA pLKO.1 4283 3UTR 100% 13.200 9.240 N Slc41a2 n/a
9 TRCN0000193890 CTCGCCATATTAGCTTGGATA pLKO.1 2267 CDS 100% 4.950 3.465 N Slc41a2 n/a
10 TRCN0000174386 CTACCTCCATTTACATAGCAT pLKO.1 2587 CDS 100% 3.000 2.100 N Slc41a2 n/a
11 TRCN0000175769 GTATTACCTCAGCCATTCCAT pLKO.1 2092 CDS 100% 3.000 2.100 N Slc41a2 n/a
12 TRCN0000353343 GTATTACCTCAGCCATTCCAT pLKO_005 2092 CDS 100% 3.000 2.100 N Slc41a2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006513811.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14304 pDONR223 100% 72.4% 78.3% None (many diffs) n/a
2 ccsbBroad304_14304 pLX_304 0% 72.4% 78.3% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000473433 ATGACGGTTCTCGCTTTCACACCC pLX_317 27.9% 72.4% 78.3% V5 (not translated due to frame shift) (many diffs) n/a
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