Transcript: Mouse XM_006514233.2

PREDICTED: Mus musculus glutamate receptor interacting protein 1 (Grip1), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Grip1 (74053)
Length:
4556
CDS:
769..4281

Additional Resources:

NCBI RefSeq record:
XM_006514233.2
NBCI Gene record:
Grip1 (74053)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514233.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306011 AGAGCCGTTTGATCCTATTAT pLKO_005 3009 CDS 100% 15.000 21.000 N Grip1 n/a
2 TRCN0000089516 GACCTGGTTATTAGCAGAAAT pLKO.1 4126 CDS 100% 13.200 18.480 N Grip1 n/a
3 TRCN0000325619 GACCTGGTTATTAGCAGAAAT pLKO_005 4126 CDS 100% 13.200 18.480 N Grip1 n/a
4 TRCN0000245914 GATGAGAGTCCCTACACTAAA pLKO_005 994 CDS 100% 13.200 18.480 N GRIP1 n/a
5 TRCN0000089517 CGAGCAAAGTCACACTAGAAA pLKO.1 2585 CDS 100% 5.625 7.875 N Grip1 n/a
6 TRCN0000089513 CCGCCTCTGATTTCCTATATT pLKO.1 2434 CDS 100% 15.000 10.500 N Grip1 n/a
7 TRCN0000353986 CCGCCTCTGATTTCCTATATT pLKO_005 2434 CDS 100% 15.000 10.500 N Grip1 n/a
8 TRCN0000306078 GAGAGTTCCGGAGCGATTATT pLKO_005 2929 CDS 100% 15.000 10.500 N Grip1 n/a
9 TRCN0000306010 GGTATCGGGAGGCATTGATAA pLKO_005 1140 CDS 100% 13.200 9.240 N Grip1 n/a
10 TRCN0000089515 CCTCTGATTTCCTATATTGAA pLKO.1 2437 CDS 100% 5.625 3.938 N Grip1 n/a
11 TRCN0000089514 CGGAGATAGAATCCTAGCCAT pLKO.1 3084 CDS 100% 2.640 1.848 N Grip1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514233.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07882 pDONR223 100% 79.1% 84.9% None (many diffs) n/a
2 ccsbBroad304_07882 pLX_304 0% 79.1% 84.9% V5 (many diffs) n/a
3 TRCN0000468758 TCCCCCAACCTGCTTCACAAAGAC pLX_317 13.6% 79.1% 84.9% V5 (many diffs) n/a
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