Transcript: Mouse XM_006517250.3

PREDICTED: Mus musculus zinc finger protein 72 (Zfp72), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp72 (238722)
Length:
4140
CDS:
504..1811

Additional Resources:

NCBI RefSeq record:
XM_006517250.3
NBCI Gene record:
Zfp72 (238722)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006517250.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238517 GTTCGGAAGTCACTCCTTATT pLKO_005 675 CDS 100% 13.200 18.480 N Zfp72 n/a
2 TRCN0000238513 TAGAATCCATACGTACTAAAT pLKO_005 1793 CDS 100% 13.200 18.480 N Zfp72 n/a
3 TRCN0000238515 GCAATTGTTCAGCACTAATTC pLKO_005 1261 CDS 100% 13.200 10.560 N Zfp72 n/a
4 TRCN0000238514 ACTCTTCTTCACACCTTAATT pLKO_005 1429 CDS 100% 15.000 10.500 N Zfp72 n/a
5 TRCN0000238516 GGCAATGTGTTAAACAGTTAT pLKO_005 1855 3UTR 100% 13.200 9.240 N Zfp72 n/a
6 TRCN0000344449 GCGGAGAGAAACCCTACAAAT pLKO_005 967 CDS 100% 13.200 7.920 N ZNF737 n/a
7 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1467 CDS 100% 15.000 7.500 Y ZNF443 n/a
8 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1467 CDS 100% 15.000 7.500 Y Zfp97 n/a
9 TRCN0000239639 CAGGAGAGAAACCCTACAAAT pLKO_005 715 CDS 100% 13.200 6.600 Y Zfp992 n/a
10 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 799 CDS 100% 13.200 6.600 Y Zfp934 n/a
11 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 799 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
12 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 799 CDS 100% 13.200 6.600 Y EG668616 n/a
13 TRCN0000431848 GATGTGATGTTGGAGAATTAC pLKO_005 498 5UTR 100% 13.200 6.600 Y Rex2 n/a
14 TRCN0000016346 CACTGGAGAGAAACCCTACAA pLKO.1 797 CDS 100% 4.950 2.475 Y ZNF254 n/a
15 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 712 CDS 100% 10.800 5.400 Y Gm14308 n/a
16 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 1384 CDS 100% 5.625 2.813 Y ZNF345 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006517250.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.