Transcript: Mouse XM_006533016.1

PREDICTED: Mus musculus K(lysine) acetyltransferase 7 (Kat7), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Kat7 (217127)
Length:
3540
CDS:
646..2013

Additional Resources:

NCBI RefSeq record:
XM_006533016.1
NBCI Gene record:
Kat7 (217127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006533016.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366274 TTATGACAGAAGCGGACAATA pLKO_005 1511 CDS 100% 13.200 18.480 N Kat7 n/a
2 TRCN0000374903 ACCATAAGACGCTATACTATG pLKO_005 1466 CDS 100% 10.800 15.120 N Kat7 n/a
3 TRCN0000374846 TCGAGTACAGATCCCTCATAG pLKO_005 2240 3UTR 100% 10.800 15.120 N Kat7 n/a
4 TRCN0000366275 CCTCGAACTCCAACCGGAAAT pLKO_005 553 5UTR 100% 10.800 8.640 N Kat7 n/a
5 TRCN0000232420 TGGAACCGAAGATTCCGATTT pLKO_005 216 5UTR 100% 10.800 8.640 N KAT7 n/a
6 TRCN0000366312 TGGAACCGAAGATTCCGATTT pLKO_005 216 5UTR 100% 10.800 8.640 N Kat7 n/a
7 TRCN0000039239 CCCATGCTTTCCTTTGTATTT pLKO.1 2666 3UTR 100% 13.200 9.240 N Kat7 n/a
8 TRCN0000379114 GAGAGACAGCTGCGGTATAAG pLKO_005 940 CDS 100% 13.200 9.240 N Kat7 n/a
9 TRCN0000039240 GCCCTTCAGATGCTCAAGTAT pLKO.1 1858 CDS 100% 5.625 3.938 N Kat7 n/a
10 TRCN0000039243 CCTGACAAGTGAATATGACTT pLKO.1 1077 CDS 100% 4.950 3.465 N Kat7 n/a
11 TRCN0000039241 CGAAAGCTACAATTTCAACAT pLKO.1 705 CDS 100% 4.950 3.465 N Kat7 n/a
12 TRCN0000039242 GACCTGATAGATGAGTGGATA pLKO.1 1912 CDS 100% 4.950 3.465 N Kat7 n/a
13 TRCN0000021630 CGGGATAAGCAGATAGAAGAA pLKO.1 856 CDS 100% 4.950 2.970 N KAT7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006533016.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07760 pDONR223 100% 67.8% 74.4% None (many diffs) n/a
2 ccsbBroad304_07760 pLX_304 0% 67.8% 74.4% V5 (many diffs) n/a
3 TRCN0000475389 TATGTTGACTTCCAATGAAAGGCT pLX_317 19.8% 67.8% 74.4% V5 (many diffs) n/a
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