Transcript: Human XM_006711043.3

PREDICTED: Homo sapiens F-box protein 44 (FBXO44), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FBXO44 (93611)
Length:
984
CDS:
105..875

Additional Resources:

NCBI RefSeq record:
XM_006711043.3
NBCI Gene record:
FBXO44 (93611)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006711043.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430552 CAAGTACCAGCTGTGCGTTCA pLKO_005 591 CDS 100% 4.050 5.670 N FBXO44 n/a
2 TRCN0000425161 TCTGGAGCCTGGATGTGAATG pLKO_005 382 CDS 100% 10.800 7.560 N FBXO44 n/a
3 TRCN0000420236 CGTCCGCTACATCTGGTTTCA pLKO_005 732 CDS 100% 4.950 3.465 N FBXO44 n/a
4 TRCN0000073325 CTCCCACACATTCTCCAACTA pLKO.1 702 CDS 100% 4.950 3.465 N FBXO44 n/a
5 TRCN0000428058 CCTCAAGGCCGAAGGGTATTG pLKO_005 495 CDS 100% 3.600 2.520 N FBXO44 n/a
6 TRCN0000222595 CCAGCAGAAGAGCGATGCCAA pLKO.1 669 CDS 100% 0.880 0.616 N FBXO44 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006711043.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04604 pDONR223 100% 87.5% 87.5% None 363_458del n/a
2 ccsbBroad304_04604 pLX_304 0% 87.5% 87.5% V5 363_458del n/a
3 TRCN0000467327 ATAAGTGAACCAGAGCAAGCGTTC pLX_317 58.2% 87.5% 87.5% V5 363_458del n/a
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