Transcript: Human XM_006712784.1

PREDICTED: Homo sapiens ILK associated serine/threonine phosphatase (ILKAP), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ILKAP (80895)
Length:
1478
CDS:
370..1344

Additional Resources:

NCBI RefSeq record:
XM_006712784.1
NBCI Gene record:
ILKAP (80895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006712784.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231636 CATTACTCGGGTTTCATATTT pLKO_005 588 CDS 100% 15.000 21.000 N ILKAP n/a
2 TRCN0000231638 GGCAATCTTGTGTCGTTATAA pLKO_005 879 CDS 100% 15.000 21.000 N ILKAP n/a
3 TRCN0000231637 TATTGCCAACCTCGGAGATAG pLKO_005 855 CDS 100% 10.800 15.120 N ILKAP n/a
4 TRCN0000002651 CCTCATTACTCGGGTTTCATA pLKO.1 585 CDS 100% 5.625 7.875 N ILKAP n/a
5 TRCN0000199339 CCGCTAGCAGTGGCGATTCAG pLKO.1 323 5UTR 100% 0.000 0.000 N ILKAP n/a
6 TRCN0000231639 ATGGGCTCTTCAAGGTCTTTA pLKO_005 1142 CDS 100% 13.200 9.240 N ILKAP n/a
7 TRCN0000002655 AGAGCGGATGAGGATACAGAA pLKO.1 963 CDS 100% 4.950 3.465 N ILKAP n/a
8 TRCN0000002654 AGTGGCGATTCAGGTTCTCTT pLKO.1 331 5UTR 100% 4.950 3.465 N ILKAP n/a
9 TRCN0000197028 GAGCACGCATGGTATTGACTT pLKO.1 1363 3UTR 100% 4.950 3.465 N ILKAP n/a
10 TRCN0000002652 TCAGCAAAGAGCATAATCCAA pLKO.1 932 CDS 100% 3.000 2.100 N ILKAP n/a
11 TRCN0000002653 CTTCATCTTGTCCTGTCTCGA pLKO.1 1182 CDS 100% 2.640 1.584 N ILKAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006712784.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04228 pDONR223 100% 82.6% 82.6% None 0_1ins204 n/a
2 ccsbBroad304_04228 pLX_304 0% 82.6% 82.6% V5 0_1ins204 n/a
3 TRCN0000472884 GGGCGTGTACAGTAACTTCTGCAG pLX_317 45% 82.6% 82.6% V5 0_1ins204 n/a
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