Transcript: Human XM_006714991.3

PREDICTED: Homo sapiens forkhead box P4 (FOXP4), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FOXP4 (116113)
Length:
3993
CDS:
264..2303

Additional Resources:

NCBI RefSeq record:
XM_006714991.3
NBCI Gene record:
FOXP4 (116113)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714991.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000220226 GTTCGCCTATTTCCGCAGAAA pLKO.1 1760 CDS 100% 4.950 6.930 N FOXP4 n/a
2 TRCN0000220225 CCAGTTTATCAAACACCTCAA pLKO.1 1226 CDS 100% 4.050 3.240 N FOXP4 n/a
3 TRCN0000274894 CCAGTTTATCAAACACCTCAA pLKO_005 1226 CDS 100% 4.050 3.240 N FOXP4 n/a
4 TRCN0000220228 CACCAGGATGTTCGCCTATTT pLKO.1 1751 CDS 100% 13.200 9.240 N FOXP4 n/a
5 TRCN0000274834 CACCAGGATGTTCGCCTATTT pLKO_005 1751 CDS 100% 13.200 9.240 N FOXP4 n/a
6 TRCN0000285257 TGACCCTGAATGAGATCTATA pLKO_005 1723 CDS 100% 13.200 9.240 N FOXP4 n/a
7 TRCN0000274833 GTCTCTGCAGCAGACTCATTC pLKO_005 1452 CDS 100% 10.800 7.560 N FOXP4 n/a
8 TRCN0000220227 CCAGAATCATGAGTTCTACAA pLKO.1 1625 CDS 100% 4.950 3.465 N FOXP4 n/a
9 TRCN0000274832 CCAGAATCATGAGTTCTACAA pLKO_005 1625 CDS 100% 4.950 3.465 N FOXP4 n/a
10 TRCN0000220224 CCAGGGAACAATGACAGCAAA pLKO.1 522 CDS 100% 4.950 3.465 N FOXP4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714991.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09429 pDONR223 100% 99.5% 99.5% None 81C>A;421_426delCAGCTA;656_657insAGC n/a
2 TRCN0000467359 GCGGCTCATTGTCAACTTTCAGGT pLX_317 17.7% 97.9% 97.9% V5 21_23delGGAinsCCT;1147_1182del;1280_1281delGCinsAA n/a
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