Construct: ORF ccsbBroadEn_09429
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002709.1_s300c1, BRDN0000390510
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FOXP4 (116113)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116113 | FOXP4 | forkhead box P4 | NM_001012427.2 | 99.9% | 100% | 81C>A |
| 2 | human | 116113 | FOXP4 | forkhead box P4 | NM_001012426.1 | 99.6% | 99.7% | 81C>A;421_426delCAGCTA |
| 3 | human | 116113 | FOXP4 | forkhead box P4 | XM_006714991.3 | 99.5% | 99.5% | 81C>A;421_426delCAGCTA;656_657insAGC |
| 4 | human | 116113 | FOXP4 | forkhead box P4 | XM_011514290.2 | 98.9% | 98.9% | 81C>A;651_671del |
| 5 | human | 116113 | FOXP4 | forkhead box P4 | XM_011514289.2 | 98.6% | 98.6% | 81C>A;421_426delCAGCTA;657_677del |
| 6 | human | 116113 | FOXP4 | forkhead box P4 | XM_017010233.1 | 98.6% | 98.6% | 81C>A;421_426delCAGCTA;657_677del |
| 7 | human | 116113 | FOXP4 | forkhead box P4 | XM_024446319.1 | 97.8% | 97.9% | 81C>A;421_426delCAGCTA;1149_1150ins36 |
| 8 | human | 116113 | FOXP4 | forkhead box P4 | NM_138457.3 | 97.7% | 97.7% | (many diffs) |
| 9 | human | 116113 | FOXP4 | forkhead box P4 | XM_011514291.3 | 96.8% | 96.9% | (many diffs) |
| 10 | human | 116113 | FOXP4 | forkhead box P4 | XM_011514292.3 | 93.9% | 94% | (many diffs) |
| 11 | human | 116113 | FOXP4 | forkhead box P4 | XM_017010234.2 | 91.3% | 91.9% | (many diffs) |
| 12 | human | 116113 | FOXP4 | forkhead box P4 | XM_011514293.3 | 83.2% | 83.2% | 0_1ins318;103_108delCAGCTA;339_359del |
| 13 | human | 116113 | FOXP4 | forkhead box P4 | XR_926053.2 | 51.5% | (many diffs) | |
| 14 | human | 116113 | FOXP4 | forkhead box P4 | XR_926052.3 | 51.1% | (many diffs) | |
| 15 | mouse | 74123 | Foxp4 | forkhead box P4 | NM_001110824.1 | 87.8% | 91.9% | (many diffs) |
| 16 | mouse | 74123 | Foxp4 | forkhead box P4 | XM_030250107.1 | 87.8% | 91.9% | (many diffs) |
| 17 | mouse | 74123 | Foxp4 | forkhead box P4 | XM_030250108.1 | 87.6% | 91.8% | (many diffs) |
| 18 | mouse | 74123 | Foxp4 | forkhead box P4 | XM_017317686.2 | 86.9% | 91% | (many diffs) |
| 19 | mouse | 74123 | Foxp4 | forkhead box P4 | XM_017317687.2 | 86.9% | 91% | (many diffs) |
| 20 | mouse | 74123 | Foxp4 | forkhead box P4 | XM_017317688.2 | 86.7% | 90.9% | (many diffs) |
| 21 | mouse | 74123 | Foxp4 | forkhead box P4 | NM_001110825.1 | 86.1% | 90.2% | (many diffs) |
| 22 | mouse | 74123 | Foxp4 | forkhead box P4 | NM_028767.2 | 86% | 90% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2100
- ORF length:
- 2034
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGTGGAATCT GCCTCGGAGA CAATCAGGTC GGCTCCATCT GGTCAGAATG 121 GCGTGGGCAG CCTCTCTGGG CAAGCAGATG GCAGCAGCGG CGGGGCCACA GGGACAACTG 181 CAAGTGGCAC GGGCAGGGAA GTGACCACGG GTGCAGACAG CAATGGTGAG ATGAGTCCCG 241 CAGAGCTGCT GCACTTCCAG CAGCAACAGG CTCTCCAAGT GGCCCGGCAG TTCCTGCTGC 301 AGCAGGCCTC AGGCCTGAGC TCCCCAGGGA ACAATGACAG CAAACAGTCT GCCTCTGCTG 361 TGCAGGTGCC TGTGTCGGTG GCCATGATGT CGCCGCAGAT GCTTACCCCG CAACAGATGC 421 AGCAGATCCT GTCGCCCCCG CAGCTGCAGG CCTTGCTCCA GCAGCAGCAA GCCCTCATGC 481 TCCAGCAGGA GTACTACAAG AAGCAGCAGG AGCAGCTCCA CCTGCAGCTC CTCACCCAGC 541 AGCAGGCTGG GAAACCGCAG CCCAAAGAGG CACTGGGGAA CAAGCAGCTG GCCTTCCAGC 601 AGCAGCTCCT GCAAATGCAA CAGTTGCAGC AGCAGCACCT GCTCAACCTG CAGAGGCAGG 661 GGCTGGTCAG CCTGCAGCCC AACCAAGCCT CGGGGCCCCT CCAGACCCTT CCGCAAGCAG 721 CTGTTTGCCC AACAGACCTG CCCCAGCTGT GGAAGGGCGA GGGTGCCCCC GGGCAGCCTG 781 CCGAGGACAG CGTCAAGCAG GAGGGGCTGG ACCTCACTGG CACGGCCGCC ACCGCTACCT 841 CGTTTGCCGC TCCCCCCAAG GTCTCACCCC CCCTCTCCCA CCATACCCTG CCCAACGGAC 901 AGCCTACTGT GCTCACATCT CGGAGAGACA GCTCTTCCCA CGAGGAGACC CCCGGCTCCC 961 ACCCCCTGTA CGGACACGGA GAGTGCAAGT GGCCAGGCTG TGAGACCCTG TGTGAAGACC 1021 TGGGCCAGTT TATCAAACAC CTCAACACAG AGCACGCCCT GGATGACCGG AGTACAGCCC 1081 AGTGCCGGGT ACAGATGCAG GTGGTGCAGC AGCTGGAGAT CCAGCTCGCC AAGGAGAGCG 1141 AGCGGCTGCA GGCCATGATG GCCCACCTGC ACATGCGGCC CTCGGAGCCC AAGCCCTTCA 1201 GCCAGCCACT GAACCCGGTC CCCGGCTCCT CCTCATTCTC CAAGGTGACC GTCTCTGCAG 1261 CAGACTCATT CCCAGATGGT CTCGTGCACC CCCCGACCTC GGCCGCAGCC CCTGTCACCC 1321 CTCTACGGCC CCCTGGCCTG GGCTCTGCCT CCCTGCATGG TGGGGGCCCA GCCCGTCGGA 1381 GAAGCAGTGA CAAGTTCTGC TCCCCCATCT CCTCAGAGCT GGCCCAGAAT CATGAGTTCT 1441 ACAAGAACGC CGACGTCCGG CCCCCCTTCA CCTACGCCTC CCTCATCCGC CAGGCCATCC 1501 TGGAAACCCC TGACAGGCAG CTGACCCTGA ATGAGATCTA TAACTGGTTC ACCAGGATGT 1561 TCGCCTATTT CCGCAGAAAC ACTGCCACCT GGAAGAACGC CGTGCGCCAC AACCTCAGCC 1621 TGCACAAGTG CTTCGTCCGC GTGGAGAACG TCAAGGGTGC CGTGTGGACT GTGGACGAGC 1681 GGGAGTATCA GAAGCGGAGA CCGCCAAAGA TGACAGGGAG CCCCACCCTG GTGAAGAACA 1741 TGATCTCTGG CCTCAGCTAT GGAGCACTTA ATGCCAGCTA CCAGGCCGCC CTGGCCGAGA 1801 GCAGCTTCCC CCTCCTCAAC AGCCCTGGCA TGCTGAACCC TGGCTCCGCC AGCAGCCTGC 1861 TGCCCCTCAG CCACGATGAC GTGGGTGCCC CCGTGGAGCC GCTGCCCAGC AACGGCAGCA 1921 GCAGCCCTCC TCGCCTCTCC CCGCCCCAGT ACAGCCACCA GGTGCAGGTG AAGGAGGAGC 1981 CAGCAGAGGC AGAGGAAGAC AGGCAGCCCG GGCCTCCCCT GGGCGCCCCT AACCCCAGCG 2041 CCTCGGGGCC TCCGGAAGAC AGGGACCTGG AGGAGGAGCT GCCGGGAGAA GAACTGTCCT 2101 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2161 acgaac