Transcript: Human XM_006715281.3

PREDICTED: Homo sapiens RHO family interacting cell polarization regulator 2 (RIPOR2), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RIPOR2 (9750)
Length:
2445
CDS:
357..2234

Additional Resources:

NCBI RefSeq record:
XM_006715281.3
NBCI Gene record:
RIPOR2 (9750)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715281.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415672 GACGCCTGGAGTTTCATATAA pLKO_005 847 CDS 100% 15.000 21.000 N RIPOR2 n/a
2 TRCN0000428396 GACCTAGACAAGCAAATTAAA pLKO_005 807 CDS 100% 15.000 10.500 N RIPOR2 n/a
3 TRCN0000412409 GAACCAAGAAGTCATGAATTT pLKO_005 2192 CDS 100% 13.200 9.240 N RIPOR2 n/a
4 TRCN0000433044 TGAACTCTATGAAGCTTATTG pLKO_005 878 CDS 100% 13.200 9.240 N RIPOR2 n/a
5 TRCN0000183335 GCCAATCTTGTTTCCTATTCT pLKO.1 2297 3UTR 100% 5.625 3.938 N RIPOR2 n/a
6 TRCN0000155019 GCAGATCCTTTCTAGATGGAA pLKO.1 2095 CDS 100% 3.000 2.100 N RIPOR2 n/a
7 TRCN0000155166 GATCAACTCATGGCCAATCTT pLKO.1 2285 3UTR 100% 5.625 3.375 N RIPOR2 n/a
8 TRCN0000156437 CCTCCTCAGTGATCAACTCAT pLKO.1 2275 3UTR 100% 4.950 2.970 N RIPOR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715281.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000467274 GGGGGAGTGATTCTGGCAACTAAG pLX_317 24.3% 94.5% 94.5% V5 1_102del n/a
2 ccsbBroadEn_07481 pDONR223 100% 94.5% 94.4% None 1_102del;1860T>N n/a
3 ccsbBroad304_07481 pLX_304 0% 94.5% 94.4% V5 1_102del;1860T>N n/a
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