Construct: ORF TRCN0000467274
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001594.1_s317c1
- Derived from:
- ccsbBroadEn_07481
- DNA Barcode:
- GGGGGAGTGATTCTGGCAACTAAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RIPOR2 (9750)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467274
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_015864.4 | 100% | 100% | |
| 2 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_017011526.1 | 100% | 100% | |
| 3 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_017011527.1 | 100% | 100% | |
| 4 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_001286447.1 | 96.3% | 96.2% | 1771G>A;1773_1839delinsG |
| 5 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_017011525.1 | 96.3% | 96.2% | 1771G>A;1773_1839delinsG |
| 6 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_006715281.3 | 94.5% | 94.5% | 1_102del |
| 7 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_017011524.1 | 91.9% | 91.9% | 1_87del;1858G>A;1860_1926delinsG |
| 8 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_001286446.2 | 91.2% | 91.1% | 1_102del;1873G>A;1875_1941delinsG |
| 9 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_001346031.2 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 10 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_001346032.2 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 11 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_006715279.2 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 12 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_011515008.2 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 13 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_011515009.1 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 14 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_017011523.1 | 58% | 57.9% | 1771_1773delTGC;1777_3054del |
| 15 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_001286445.3 | 56.4% | 56.3% | 1_87del;1858_1860delTGC;1864_3141del |
| 16 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_011515007.1 | 56.4% | 56.3% | 1_87del;1858_1860delTGC;1864_3141del |
| 17 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_006715275.2 | 56.1% | 56% | 1_102del;1873_1875delTGC;1879_3156del |
| 18 | human | 9750 | RIPOR2 | RHO family interacting cell... | NM_014722.5 | 55.3% | 55.2% | 1077_1226del;1921_1923delTGC;1927_3204del |
| 19 | human | 9750 | RIPOR2 | RHO family interacting cell... | XM_011515012.1 | 53.6% | 53.5% | (many diffs) |
| 20 | human | 9750 | RIPOR2 | RHO family interacting cell... | XR_001743760.1 | 32.7% | 1_458del;2229_2248del;2252_5422del | |
| 21 | mouse | 193385 | Ripor2 | RHO family interacting cell... | NM_001286101.1 | 80.7% | 83.5% | (many diffs) |
| 22 | mouse | 193385 | Ripor2 | RHO family interacting cell... | NM_178658.5 | 77.2% | 79.9% | (many diffs) |
| 23 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516595.3 | 76.5% | 79.1% | (many diffs) |
| 24 | mouse | 193385 | Ripor2 | RHO family interacting cell... | NM_001080381.1 | 72.8% | 75.3% | (many diffs) |
| 25 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516594.3 | 71.8% | 74.3% | (many diffs) |
| 26 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516592.3 | 47.1% | 48.7% | (many diffs) |
| 27 | mouse | 193385 | Ripor2 | RHO family interacting cell... | NM_001286100.1 | 46.8% | 48.3% | (many diffs) |
| 28 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516590.1 | 46.8% | 48.3% | (many diffs) |
| 29 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516591.1 | 46.8% | 48.3% | (many diffs) |
| 30 | mouse | 193385 | Ripor2 | RHO family interacting cell... | NM_029679.2 | 45.7% | 47.2% | (many diffs) |
| 31 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516588.1 | 45.6% | 47.1% | (many diffs) |
| 32 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516587.3 | 45.3% | 46.8% | (many diffs) |
| 33 | mouse | 193385 | Ripor2 | RHO family interacting cell... | XM_006516589.3 | 43.8% | 45.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1839
- ORF length:
- 1773
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtt ggtaggatcc cagtcttttt cgcctggagg gcccaatggg atcattagaa 121 gccagtcctt tgcgggtttc agcggcctcc aggaaaggcg atccaggtgt aactccttca 181 ttgaaaattc ctccgctctc aagaagcctc aggccaaact gaagaaaatg cacaatttag 241 gccacaaaaa caacaatccc cccaaagagc ctcagcctaa aagggtggaa gaagtctaca 301 gggccttgaa aaatggactt gatgaatatc tggaggttca ccagacggag ctggacaagt 361 tgacagctca gttaaaagat atgaaaagaa actctcgcct gggtgtactg tatgacctag 421 acaagcaaat taaaacaatt gaaagataca tgagacgcct ggagtttcat ataagtaagg 481 tagatgaact ctatgaagct tattgtatcc agcgacgcct ccaggatggt gccagcaaaa 541 tgaagcaagc cttcgcaaca tcccctgcca gcaaagctgc ccgggagagt ctgacagaga 601 tcaatcggag cttcaaggag tacacagaga atatgtgcac cattgaagtg gagctagaga 661 atctgctggg agaattctcc atcaagatga aaggtctggc tggctttgca cgcctctgtc 721 ctggagatca atatgaaatt ttcatgaagt atggccggca gcggtggaaa ctgaaaggca 781 aaatagaagt aaatggcaag cagagctggg atggagaaga aacagttttt ctgcccctga 841 tagttgggtt catctccatc aaggtcacgg agctcaaagg gctagcaact cacatcctgg 901 taggtagcgt gacctgtgag accaaagagc tgtttgcagc ccgacctcag gtagtggctg 961 tcgacatcaa tgaccttggt accatcaaac tgaacctgga aatcacctgg tatccatttg 1021 acgtggagga catgaccgca tcctcaggcg ctgggaacaa ggcagcagcc cttcagagga 1081 gaatgtccat gtacagccag ggtaccccgg aaacgcccac cttcaaagac cactccttct 1141 tttcaaatct acctgatgac atctttgaaa atggaaaggc agccgaggag aaaatgccac 1201 tgtcgctcag cttcagtgac ctgcccaacg gggactgcgc cctcacctcc cactcaacag 1261 gctccccttc caactcaaca aatccagaaa ttaccatcac ccctgcggag tttaacctca 1321 gcagcttggc ctcccagaat gagggtatgg atgacaccag ctcagcatct tccaggaact 1381 ccctgggaga aggccaagag ccaaagtcac accTGAAGGA GGAAGACCCA GAGGAGCCCA 1441 GAAAACCTGC CTCGGCCCCA TCTGAGGCTT GCCGCCGACA GTCCTCAGGT GCTGGGGCTG 1501 AGCACCTGTT CCTTGAGAAT GATGTTGCAG AAGCACTTCT GCAAGAGTCT GAGGAGGCCT 1561 CTGAGCTCAA GCCTGTGGAA CTGGACACTT CGGAAGGAAA CATCACAAAG CAGCTGGTCA 1621 AGAGGCTCAC ATCTGCAGAG GTGCCAATGG CCACAGACAG GCTGCTCTCT GAGGGTTCTG 1681 TTGGTGGAGA ATCTGAAGGC TGCAGATCCT TTCTAGATGG AAGCTTAGAG GATGCTTTTA 1741 ATGGGCTTTT ACTTGCATTA GAACCACATA AAGAGCAGTA TAAAGAGTTT CAGGATCTGA 1801 ACCAAGAAGT CATGAATTTG GATGATATTC TAAAAAAGTA CCCAACTTTC TTGTACAAAG 1861 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1921 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1981 ACGAGGGGGA GTGATTCTGG CAACTAAGAC GCGTTAAGTC gacaatcaac ctctggatta 2041 caaaatttgt gaaagatt