Construct: ORF ccsbBroadEn_07481

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001594.1_s300c1, BRDN0000386756
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RIPOR2 (9750)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9750 RIPOR2 RHO family interacting cell... NM_015864.4 99.9% 99.8% 1758T>N
2 human 9750 RIPOR2 RHO family interacting cell... XM_017011526.1 99.9% 99.8% 1758T>N
3 human 9750 RIPOR2 RHO family interacting cell... XM_017011527.1 99.9% 99.8% 1758T>N
4 human 9750 RIPOR2 RHO family interacting cell... NM_001286447.1 96.2% 96% 1758T>N;1771G>A;1773_1839delinsG
5 human 9750 RIPOR2 RHO family interacting cell... XM_017011525.1 96.2% 96% 1758T>N;1771G>A;1773_1839delinsG
6 human 9750 RIPOR2 RHO family interacting cell... XM_006715281.3 94.5% 94.4% 1_102del;1860T>N
7 human 9750 RIPOR2 RHO family interacting cell... XM_017011524.1 91.9% 91.7% (many diffs)
8 human 9750 RIPOR2 RHO family interacting cell... NM_001286446.2 91.1% 91% (many diffs)
9 human 9750 RIPOR2 RHO family interacting cell... NM_001346031.2 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
10 human 9750 RIPOR2 RHO family interacting cell... NM_001346032.2 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
11 human 9750 RIPOR2 RHO family interacting cell... XM_006715279.2 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
12 human 9750 RIPOR2 RHO family interacting cell... XM_011515008.2 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
13 human 9750 RIPOR2 RHO family interacting cell... XM_011515009.1 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
14 human 9750 RIPOR2 RHO family interacting cell... XM_017011523.1 58% 57.8% 1758T>N;1771_1773delTGC;1777_3054del
15 human 9750 RIPOR2 RHO family interacting cell... NM_001286445.3 56.4% 56.2% (many diffs)
16 human 9750 RIPOR2 RHO family interacting cell... XM_011515007.1 56.4% 56.2% (many diffs)
17 human 9750 RIPOR2 RHO family interacting cell... XM_006715275.2 56.1% 55.9% (many diffs)
18 human 9750 RIPOR2 RHO family interacting cell... NM_014722.5 55.3% 55.1% (many diffs)
19 human 9750 RIPOR2 RHO family interacting cell... XM_011515012.1 53.5% 53.4% (many diffs)
20 human 9750 RIPOR2 RHO family interacting cell... XR_001743760.1 32.6% (many diffs)
21 mouse 193385 Ripor2 RHO family interacting cell... NM_001286101.1 80.7% 83.4% (many diffs)
22 mouse 193385 Ripor2 RHO family interacting cell... NM_178658.5 77.2% 79.7% (many diffs)
23 mouse 193385 Ripor2 RHO family interacting cell... XM_006516595.3 76.4% 79% (many diffs)
24 mouse 193385 Ripor2 RHO family interacting cell... NM_001080381.1 72.7% 75.2% (many diffs)
25 mouse 193385 Ripor2 RHO family interacting cell... XM_006516594.3 71.8% 74.2% (many diffs)
26 mouse 193385 Ripor2 RHO family interacting cell... XM_006516592.3 47.1% 48.6% (many diffs)
27 mouse 193385 Ripor2 RHO family interacting cell... NM_001286100.1 46.7% 48.2% (many diffs)
28 mouse 193385 Ripor2 RHO family interacting cell... XM_006516590.1 46.7% 48.2% (many diffs)
29 mouse 193385 Ripor2 RHO family interacting cell... XM_006516591.1 46.7% 48.2% (many diffs)
30 mouse 193385 Ripor2 RHO family interacting cell... NM_029679.2 45.6% 47.1% (many diffs)
31 mouse 193385 Ripor2 RHO family interacting cell... XM_006516588.1 45.5% 47% (many diffs)
32 mouse 193385 Ripor2 RHO family interacting cell... XM_006516587.3 45.3% 46.7% (many diffs)
33 mouse 193385 Ripor2 RHO family interacting cell... XM_006516589.3 43.8% 45.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1839
ORF length:
1773
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GGTAGGATCC CAGTCTTTTT CGCCTGGAGG GCCCAATGGG ATCATTAGAA
121GCCAGTCCTT TGCGGGTTTC AGCGGCCTCC AGGAAAGGCG ATCCAGGTGT AACTCCTTCA
181TTGAAAATTC CTCCGCTCTC AAGAAGCCTC AGGCCAAACT GAAGAAAATG CACAATTTAG
241GCCACAAAAA CAACAATCCC CCCAAAGAGC CTCAGCCTAA AAGGGTGGAA GAAGTCTACA
301GGGCCTTGAA AAATGGACTT GATGAATATC TGGAGGTTCA CCAGACGGAG CTGGACAAGT
361TGACAGCTCA GTTAAAAGAT ATGAAAAGAA ACTCTCGCCT GGGTGTACTG TATGACCTAG
421ACAAGCAAAT TAAAACAATT GAAAGATACA TGAGACGCCT GGAGTTTCAT ATAAGTAAGG
481TAGATGAACT CTATGAAGCT TATTGTATCC AGCGACGCCT CCAGGATGGT GCCAGCAAAA
541TGAAGCAAGC CTTCGCAACA TCCCCTGCCA GCAAAGCTGC CCGGGAGAGT CTGACAGAGA
601TCAATCGGAG CTTCAAGGAG TACACAGAGA ATATGTGCAC CATTGAAGTG GAGCTAGAGA
661ATCTGCTGGG AGAATTCTCC ATCAAGATGA AAGGTCTGGC TGGCTTTGCA CGCCTCTGTC
721CTGGAGATCA ATATGAAATT TTCATGAAGT ATGGCCGGCA GCGGTGGAAA CTGAAAGGCA
781AAATAGAAGT AAATGGCAAG CAGAGCTGGG ATGGAGAAGA AACAGTTTTT CTGCCCCTGA
841TAGTTGGGTT CATCTCCATC AAGGTCACGG AGCTCAAAGG GCTAGCAACT CACATCCTGG
901TAGGTAGCGT GACCTGTGAG ACCAAAGAGC TGTTTGCAGC CCGACCTCAG GTAGTGGCTG
961TCGACATCAA TGACCTTGGT ACCATCAAAC TGAACCTGGA AATCACCTGG TATCCATTTG
1021ACGTGGAGGA CATGACCGCA TCCTCAGGCG CTGGGAACAA GGCAGCAGCC CTTCAGAGGA
1081GAATGTCCAT GTACAGCCAG GGTACCCCGG AAACGCCCAC CTTCAAAGAC CACTCCTTCT
1141TTTCAAATCT ACCTGATGAC ATCTTTGAAA ATGGAAAGGC AGCCGAGGAG AAAATGCCAC
1201TGTCGCTCAG CTTCAGTGAC CTGCCCAACG GGGACTGCGC CCTCACCTCC CACTCAACAG
1261GCTCCCCTTC CAACTCAACA AATCCAGAAA TTACCATCAC CCCTGCGGAG TTTAACCTCA
1321GCAGCTTGGC CTCCCAGAAT GAGGGTATGG ATGACACCAG CTCAGCATCT TCCAGGAACT
1381CCCTGGGAGA AGGCCAAGAG CCAAAGTCAC ACCTGAAGGA GGAAGACCCA GAGGAGCCCA
1441GAAAACCTGC CTCGGCCCCA TCTGAGGCTT GCCGCCGACA GTCCTCAGGT GCTGGGGCTG
1501AGCACCTGTT CCTTGAGAAT GATGTTGCAG AAGCACTTCT GCAAGAGTCT GAGGAGGCCT
1561CTGAGCTCAA GCCTGTGGAA CTGGACACTT CGGAAGGAAA CATCACAAAG CAGCTGGTCA
1621AGAGGCTCAC ATCTGCAGAG GTGCCAATGG CCACAGACAG GCTGCTCTCT GAGGGTTCTG
1681TTGGTGGAGA ATCTGAAGGC TGCAGATCCT TTCTAGATGG AAGCTTAGAG GATGCTTTTA
1741ATGGGCTTTT ACTTGCATTA GAACCACATA AAGAGCAGTA TAAAGAGTTT CAGGATCTGA
1801ACCAAGAAGT CATGAATTTG GANGATATTC TAAAAAAGTA CCCAACTTTC TTGTACAAAG
1861Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)