Construct: ORF TRCN0000481041

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009601.1_s317c1
Derived from:
ccsbBroadEn_07981
DNA Barcode:
CCACACCTATCACGACGTGAGGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SENP6 (26054)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481041
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26054 SENP6 SUMO specific peptidase 6 NM_001100409.3 99.9% 100% 606A>G
2 human 26054 SENP6 SUMO specific peptidase 6 XM_017010719.2 99.4% 99.4% 455_472del;624A>G
3 human 26054 SENP6 SUMO specific peptidase 6 NM_015571.4 99.3% 99.3% 455_475del;627A>G
4 human 26054 SENP6 SUMO specific peptidase 6 XM_024446400.1 96.9% 91.7% (many diffs)
5 human 26054 SENP6 SUMO specific peptidase 6 XM_011535746.2 96.4% 95.2% (many diffs)
6 human 26054 SENP6 SUMO specific peptidase 6 XM_006715457.4 94.2% 93.4% (many diffs)
7 human 26054 SENP6 SUMO specific peptidase 6 XM_017010721.1 94.2% 93.4% (many diffs)
8 human 26054 SENP6 SUMO specific peptidase 6 XM_017010725.2 90.1% 90.1% 0_1ins327;279A>G
9 human 26054 SENP6 SUMO specific peptidase 6 XM_011535747.3 89.6% 89.6% 0_1ins327;128_145del;297A>G
10 human 26054 SENP6 SUMO specific peptidase 6 XM_017010723.2 89.6% 89.6% 0_1ins327;128_145del;297A>G
11 human 26054 SENP6 SUMO specific peptidase 6 XM_017010724.2 89.6% 89.6% 0_1ins327;128_145del;297A>G
12 human 26054 SENP6 SUMO specific peptidase 6 NM_001304792.1 61.9% 61.9% 606A>G;2055_2055delGins1261
13 human 26054 SENP6 SUMO specific peptidase 6 XR_001743330.2 51.4% (many diffs)
14 human 26054 SENP6 SUMO specific peptidase 6 XR_241847.4 51.4% (many diffs)
15 human 26054 SENP6 SUMO specific peptidase 6 XR_001743331.2 49.7% (many diffs)
16 mouse 215351 Senp6 SUMO/sentrin specific pepti... NM_146003.2 81.8% 78.8% (many diffs)
17 mouse 215351 Senp6 SUMO/sentrin specific pepti... NM_001311110.1 81.4% 78.3% (many diffs)
18 mouse 215351 Senp6 SUMO/sentrin specific pepti... XM_006511017.3 73.2% 69.6% (many diffs)
19 mouse 215351 Senp6 SUMO/sentrin specific pepti... XM_006511014.1 73% 70.1% (many diffs)
20 mouse 215351 Senp6 SUMO/sentrin specific pepti... XM_006511015.3 73% 70.1% (many diffs)
21 mouse 215351 Senp6 SUMO/sentrin specific pepti... XM_006511016.3 72.7% 69.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3381
ORF length:
3315
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggccggcaag agcggcggta gcgcagggga gattactttt ctggaagctt
121tggctagatc agagtctaag agagatggag gttttaaaaa taattggagc tttgatcatg
181aagaagaaag tgaaggagat acagataaag atgggacaaa tctgctcagt gtggatgaag
241atgaggattc tgaaacctca aaaggaaaaa agttaaatcg tcgatctgaa attgttgcta
301atagctctgg tgaattcatc ttgaagacat atgtaagacg aaacaagtct gaaagtttta
361aaactttgaa aggcaaccca attggactta acatgttgag caacaataag aaattgagtg
421aaaatacgca aaatacgtca ttatgttctg gaactgtagt tcatggtaga cgttttcatc
481atgctcatgc acagatacca gtagtaaaaa cagcagccca aaggaaagaa tacccacctc
541atgtccaaaa agttgaaatt aatcctgtaa ggttaagtcg gctccaaggt gttgaacgta
601taatgaagaa aacagaagag tccgaatcac aagtggagcc tgaaattaag aggaaagtac
661aacagaaacg gcactgtagt acctatcagc ctactcctcc tctatctcct gcttcaaaaa
721aatgtttaac ccatttagag gatttgcaaa gaaattgcag acaagctatt actttgaatg
781agtctactgg accattatta agaacgtcaa ttcatcagaa ttctggagga cagaagtcac
841aaaacacagg attaacaacc aagaagtttt atggcaacaa tgtggaaaag gttccaattg
901atattattgt gaattgtgat gacagtaaac acacttattt acagactaat ggaaaagtca
961ttttacctgg ggcaaaaata cccaaaatca caaacttgaa agaaaggaaa acaagtttgt
1021cagacctaaa tgatccaatc attttgtcca gtgatgatga tgatgacaac gacagaacta
1081acagaagaga aagcatatct cctcagcctg ctgattcagc atgttcttcc cctgcaccat
1141ccactggaaa agtagaagca gcgctaaatg aaaatacttg cagagcagag cgtgaactac
1201gaagcattcc agaagactca gagttaaata cagttacatt gccaagaaaa gcaagaatga
1261aagaccagtt tggcaattct attatcaaca cacctctgaa acgtcgtaaa gtgttttctc
1321aagaacctcc agatgcttta gctttaagct gccaaagttc ctttgacagt gtcattttaa
1381actgtcgaag tatacgagta ggaacactct tccggctgtt aatagagcct gtaatttttt
1441gtttagattt tatcaagata cagctagacg aaccagacca tgatcctgta gagattatat
1501taaatacctc tgatctaact aaatgtgaat ggtgtaatgt ccgaaaatta cctgtagtgt
1561ttcttcaagc aattccagca gtttatcaaa agctgagcat ccaactgcaa atgaataagg
1621aggataaagt ttggaatgat tgtaaaggag taaataaatt aacaaattta gaagaacaat
1681atataatttt aatttttcaa aatggccttg atcctccggc aaatatggta tttgaaagta
1741tcattaatga aattggtata aagaataaca tctccaattt ttttgcgaaa attccctttg
1801aagaagctaa tggcagactt gttgcctgta caagaaccta tgaagagagc atcaaaggaa
1861gttgtgggca aaaggaaaac aaaattaaaa ctgtatcatt tgaatctaaa atacaactta
1921gaagcaaaca agaatttcag ttttttgatg aagaagaaga aactggagaa aaccacacca
1981tcttcattgg cccagtagaa aagttgatag tatatccacc acctccagct aagggaggca
2041tctctgttac caatgaggac ctgcactgtc taaatgaagg agaattttta aatgatgtta
2101ttatagactt ttatttgaaa tacttggtgc ttgaaaaact gaagaaggaa gacgctgacc
2161gaattcatat attcagttct tttttctata aacgccttaa tcagagagag aggagaaatc
2221atgaaacaac taatctgtca atacagcaaa aacggcatgg gagagtaaaa acatggaccc
2281ggcacgtaga tatttttgag aaggatttta tttttgtacc ccttaatgaa gctgcacact
2341ggtttttggc tgttgtttgt ttccccggtt tggaaaaacc aaagtatgaa cctaatcctc
2401attaccatga aaatgctgtc atacagaaat gttcaactgt agaggacagt tgtatttctt
2461cttcagccag tgaaatggag agttgttcac aaaactcttc tgccaagcct gtaattaaga
2521agatgctaaa caaaaaacat tgcatagctg taattgattc caatcctggg caggaagaaa
2581gtgaccctcg ttataagaga aacatatgca gtgtaaaata cagtgtgaaa aaaataaatc
2641atactgcgag tgaaaatgaa gaattcaata aaggagaatc tacatcccag aaagttgctg
2701ataggactaa aagtgagaat ggcctacaga atgaaagttt aagttccaca catcatacag
2761atggcttaag caaaatcaga ctaaactata gcgatgaatc acctgaagct ggtaaaatgc
2821ttgaagatga actcgtcgac ttctcagaag atcaggataa ccaggatgat agcagtgacg
2881atggattcct cgctgatgac aactgcagtt cagaaatagg acagtggcat ttaaagccta
2941ctatctgtaa acaaccttgt atcctactta tggactcact ccgaggccct tcTCGGTCAA
3001ATGTTGTCAA AATTTTAAGA GAGTATTTAG AAGTGGAATG GGAAGTTAAA AAAGGAAGCA
3061AAAGAAGTTT TTCCAAAGAT GTTATGAAGG GCTCTAATCC AAAAGTACCA CAGCAAAACA
3121ACTTCAGTGA CTGTGGTGTA TATGTATTGC AGTATGTAGA GAGCTTTTTT GAGAATCCAA
3181TTCTCAGTTT TGAACTACCT ATGAATTTGG CAAACTGGTT TCCTCCACCA AGAATGAGAA
3241CAAAAAGAGA AGAAATCCGA AACATAATTC TGAAGCTACA GGAAGATCAG AGCAAAGAGA
3301AAAGAAAGCA TAAGGACACT TACTCAACAG AAGCACCTTT AGGCGAAGGA ACAGAACAAT
3361ATGTCAATAG TATCTCAGAT TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
3421CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
3481AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACCAC ACCTATCACG
3541ACGTGAGGGG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)