Transcript: Human XM_006715894.3

PREDICTED: Homo sapiens KIAA1324 like (KIAA1324L), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIAA1324L (222223)
Length:
6540
CDS:
228..2975

Additional Resources:

NCBI RefSeq record:
XM_006715894.3
NBCI Gene record:
KIAA1324L (222223)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715894.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000143564 GTGATGGGTGTACGTTCTATT pLKO.1 2464 CDS 100% 13.200 18.480 N KIAA1324L n/a
2 TRCN0000121948 CCAAGTTAGTAATGACGACTA pLKO.1 2767 CDS 100% 4.050 5.670 N KIAA1324L n/a
3 TRCN0000143638 GAGCATGACTTCCATGAGATT pLKO.1 2523 CDS 100% 4.950 3.960 N KIAA1324L n/a
4 TRCN0000145166 GCCAGTCAACAATTATTCCTT pLKO.1 2158 CDS 100% 3.000 2.400 N KIAA1324L n/a
5 TRCN0000121626 GCACTTGGCTTTGAATATAAA pLKO.1 1188 CDS 100% 15.000 10.500 N KIAA1324L n/a
6 TRCN0000144942 GCTCTCTGTACCAACAATATA pLKO.1 2067 CDS 100% 15.000 10.500 N KIAA1324L n/a
7 TRCN0000143992 CAAAGAAACCTGCTCTAGTTT pLKO.1 3008 3UTR 100% 5.625 3.938 N KIAA1324L n/a
8 TRCN0000143775 GAGTCACAGTTGAAACCACAT pLKO.1 2245 CDS 100% 4.050 2.835 N KIAA1324L n/a
9 TRCN0000127440 CCTGCTTCAATGTTGGGAATT pLKO.1 1243 CDS 100% 0.000 0.000 N 9330182L06Rik n/a
10 TRCN0000144486 CAAACATACTCTACTGGAGAA pLKO.1 646 CDS 100% 4.050 2.430 N KIAA1324L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715894.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13433 pDONR223 100% 87.7% 87.7% None 1_336del n/a
2 ccsbBroad304_13433 pLX_304 0% 87.7% 87.7% V5 1_336del n/a
3 TRCN0000465430 GCGACATGGAAGAGCTAACTACAT pLX_317 14.6% 87.7% 87.7% V5 1_336del n/a
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