Transcript: Human XM_006716467.1

PREDICTED: Homo sapiens transcription elongation factor A1 (TCEA1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TCEA1 (6917)
Length:
2688
CDS:
376..1140

Additional Resources:

NCBI RefSeq record:
XM_006716467.1
NBCI Gene record:
TCEA1 (6917)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006716467.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000280087 ATAGAGTACGAAGTAGGATAT pLKO_005 800 CDS 100% 10.800 15.120 N TCEA1 n/a
2 TRCN0000001255 GCGGTTGAAGTGTAGGGAGAT pLKO.1 654 CDS 100% 4.050 5.670 N TCEA1 n/a
3 TRCN0000280019 GCGGTTGAAGTGTAGGGAGAT pLKO_005 654 CDS 100% 4.050 5.670 N TCEA1 n/a
4 TRCN0000001254 AGAAGAAAGAACCTGCAATTA pLKO.1 500 CDS 100% 13.200 9.240 N TCEA1 n/a
5 TRCN0000280020 AGAAGAAAGAACCTGCAATTA pLKO_005 500 CDS 100% 13.200 9.240 N TCEA1 n/a
6 TRCN0000001256 AGAATCGGAATGTCAGTTAAT pLKO.1 367 5UTR 100% 13.200 9.240 N TCEA1 n/a
7 TRCN0000001253 CGGAATGTCAGTTAATGCTAT pLKO.1 372 5UTR 100% 4.950 3.465 N TCEA1 n/a
8 TRCN0000297755 CGGAATGTCAGTTAATGCTAT pLKO_005 372 5UTR 100% 4.950 3.465 N TCEA1 n/a
9 TRCN0000010602 TGTTGTAGTTTAGAAGGCTTT pLKO.1 1880 3UTR 100% 4.050 2.835 N TCEA1 n/a
10 TRCN0000280085 TGTTGTAGTTTAGAAGGCTTT pLKO_005 1880 3UTR 100% 4.050 2.835 N TCEA1 n/a
11 TRCN0000084740 GCACTTCTGATTCTGTGCGAT pLKO.1 638 CDS 100% 2.640 3.696 N Tcea1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006716467.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01650 pDONR223 100% 84.3% 84.3% None 0_1ins141 n/a
2 ccsbBroad304_01650 pLX_304 0% 84.3% 84.3% V5 0_1ins141 n/a
3 TRCN0000480510 AGAATGCTCGGCGCCACTGGGGGG pLX_317 47.6% 84.3% 84.3% V5 0_1ins141 n/a
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