Transcript: Human XM_006718380.3

PREDICTED: Homo sapiens cAMP responsive element binding protein 3 like 1 (CREB3L1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CREB3L1 (90993)
Length:
1914
CDS:
452..1543

Additional Resources:

NCBI RefSeq record:
XM_006718380.3
NBCI Gene record:
CREB3L1 (90993)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006718380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015829 GAGTCGGACTTCCTCAACAAT pLKO.1 530 CDS 100% 5.625 7.875 N CREB3L1 n/a
2 TRCN0000015828 CGTCGTAAGAAGAAGGAGTAT pLKO.1 1373 CDS 100% 4.950 6.930 N CREB3L1 n/a
3 TRCN0000371900 CTCAGCTGCCAGTGATCAAAG pLKO_005 984 CDS 100% 10.800 7.560 N CREB3L1 n/a
4 TRCN0000428092 CTCAGCTGCCAGTGATCAAAG pLKO_005 984 CDS 100% 10.800 7.560 N Creb3l1 n/a
5 TRCN0000015831 AGCCCTCTATTGGACATGGAA pLKO.1 653 CDS 100% 3.000 2.100 N CREB3L1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006718380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09310 pDONR223 100% 68.2% 65.9% None (many diffs) n/a
2 ccsbBroad304_09310 pLX_304 0% 68.2% 65.9% V5 (many diffs) n/a
3 TRCN0000479690 GTTATACCGACAGCGGGTCCGCAC pLX_317 23.7% 68.2% 65.9% V5 (many diffs) n/a
4 ccsbBroadEn_09309 pDONR223 100% 68% 64.9% None (many diffs) n/a
5 ccsbBroad304_09309 pLX_304 0% 68% 64.9% V5 (many diffs) n/a
6 TRCN0000473501 ATCGACCGTAATGGTCATCTACCC pLX_317 28.5% 68% 64.9% V5 (many diffs) n/a
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