Transcript: Mouse XM_011242927.2

PREDICTED: Mus musculus xylulokinase homolog (H. influenzae) (Xylb), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Xylb (102448)
Length:
3974
CDS:
1538..2914

Additional Resources:

NCBI RefSeq record:
XM_011242927.2
NBCI Gene record:
Xylb (102448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011242927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000368760 TATTGGGCGTCATAGGTTTAA pLKO_005 2461 CDS 100% 13.200 18.480 N Xylb n/a
2 TRCN0000024711 CGTCATAGGTTTAATGCGGAA pLKO.1 2468 CDS 100% 2.160 3.024 N Xylb n/a
3 TRCN0000024709 GCAGAGTTGAACGTCTTCTAT pLKO.1 180 5UTR 100% 5.625 4.500 N Xylb n/a
4 TRCN0000360840 TCAGCACGCAGCAGGTTAAAG pLKO_005 145 5UTR 100% 13.200 9.240 N Xylb n/a
5 TRCN0000360767 TTCATCTTCCCTCCCTATATG pLKO_005 3362 3UTR 100% 13.200 9.240 N Xylb n/a
6 TRCN0000360765 CATCCTTAAACCAGACTAAAG pLKO_005 3264 3UTR 100% 10.800 7.560 N Xylb n/a
7 TRCN0000360838 CTATGAGGACAGCGTGCATTT pLKO_005 197 5UTR 100% 10.800 7.560 N Xylb n/a
8 TRCN0000024713 CAGCATTACATGGCGCTTCTA pLKO.1 2285 CDS 100% 4.950 3.465 N Xylb n/a
9 TRCN0000024712 CGGAATGAATCTGTTGCAGAT pLKO.1 1954 CDS 100% 4.050 2.835 N Xylb n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011242927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14948 pDONR223 0% 61.9% 62.6% None (many diffs) n/a
2 ccsbBroad304_14948 pLX_304 0% 61.9% 62.6% V5 (many diffs) n/a
3 TRCN0000471651 GACTCCCGATTGTTCTTCAGTTCC pLX_317 31% 61.9% 62.6% V5 (many diffs) n/a
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