Transcript: Mouse XM_011245324.1

PREDICTED: Mus musculus disabled 2, mitogen-responsive phosphoprotein (Dab2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dab2 (13132)
Length:
4450
CDS:
211..2511

Additional Resources:

NCBI RefSeq record:
XM_011245324.1
NBCI Gene record:
Dab2 (13132)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011245324.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000337795 CCATTAGTCGTCGATCTTAAA pLKO_005 679 CDS 100% 13.200 18.480 N Dab2 n/a
2 TRCN0000380703 ACGGTGATACTGATTACTTTG pLKO_005 1220 CDS 100% 10.800 15.120 N Dab2 n/a
3 TRCN0000380731 TCGCTCCAGCTTTGACGTATT pLKO_005 2606 3UTR 100% 10.800 15.120 N Dab2 n/a
4 TRCN0000337794 ACTATGGCTTTACGTAAATTA pLKO_005 2707 3UTR 100% 15.000 12.000 N Dab2 n/a
5 TRCN0000337869 TGGTCCCAGGAGCCATAATAA pLKO_005 1775 CDS 100% 15.000 10.500 N Dab2 n/a
6 TRCN0000183022 CCCTTGAAACTTCCAGAATAT pLKO.1 2796 3UTR 100% 13.200 9.240 N Dab2 n/a
7 TRCN0000337796 GAACATGAACATCCAGTAAAT pLKO_005 547 CDS 100% 13.200 9.240 N Dab2 n/a
8 TRCN0000381604 GGTGAAGGCCAGCATCAATTT pLKO_005 628 CDS 100% 13.200 9.240 N Dab2 n/a
9 TRCN0000157599 GCAGAAGGACTGCTAAGTCTT pLKO.1 1535 CDS 100% 4.950 3.465 N DAB2 n/a
10 TRCN0000184217 GCCCTAATGACCCTTGATGAT pLKO.1 793 CDS 100% 4.950 3.465 N Dab2 n/a
11 TRCN0000183752 CTCCAGTTACTTCAACAATAA pLKO.1 2250 CDS 100% 13.200 7.920 N Dab2 n/a
12 TRCN0000337792 CTCCAGTTACTTCAACAATAA pLKO_005 2250 CDS 100% 13.200 7.920 N Dab2 n/a
13 TRCN0000379626 TTGATGATCAAGCTAACAAAT pLKO_005 806 CDS 100% 13.200 7.920 N Dab2 n/a
14 TRCN0000195959 CCAGCAGTACAAGTCTGGAAT pLKO.1 1843 CDS 100% 4.950 2.970 N Dab2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011245324.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00417 pDONR223 100% 84.7% 83.3% None (many diffs) n/a
2 ccsbBroad304_00417 pLX_304 0% 84.7% 83.3% V5 (many diffs) n/a
3 TRCN0000466655 CCATGGGAATCCTCTGTAAGTCAG pLX_317 17.3% 84.7% 83.3% V5 (many diffs) n/a
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