Transcript: Mouse XM_011250198.2

PREDICTED: Mus musculus potassium voltage-gated channel, shaker-related subfamily, beta member 2 (Kcnab2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kcnab2 (16498)
Length:
4033
CDS:
546..1742

Additional Resources:

NCBI RefSeq record:
XM_011250198.2
NBCI Gene record:
Kcnab2 (16498)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011250198.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434578 GCATCGTCTCAGGGAAGTATG pLKO_005 1384 CDS 100% 10.800 15.120 N Kcnab2 n/a
2 TRCN0000069352 GCAAGCGGAATATCACATGTT pLKO.1 1277 CDS 100% 4.950 6.930 N Kcnab2 n/a
3 TRCN0000428857 CCATGGCCCTTCACGGAAATT pLKO_005 2049 3UTR 100% 13.200 10.560 N Kcnab2 n/a
4 TRCN0000069350 CGACAGCATTCTGGGCAATAA pLKO.1 1691 CDS 100% 13.200 10.560 N Kcnab2 n/a
5 TRCN0000417108 TGGTATTAGGGAACATCATTA pLKO_005 928 CDS 100% 13.200 10.560 N Kcnab2 n/a
6 TRCN0000069349 CCAGAGCTGTTCCACAAGATA pLKO.1 1326 CDS 100% 5.625 3.938 N Kcnab2 n/a
7 TRCN0000069351 CCTTGTCATCACCACCAAGAT pLKO.1 974 CDS 100% 4.950 3.465 N Kcnab2 n/a
8 TRCN0000069348 GCCCTTTATCACTGGGATAAA pLKO.1 2773 3UTR 100% 1.320 0.924 N Kcnab2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011250198.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07251 pDONR223 100% 81.5% 79.2% None (many diffs) n/a
2 ccsbBroad304_07251 pLX_304 0% 81.5% 79.2% V5 (many diffs) n/a
3 TRCN0000472860 ATCACAACTATCGTTATTTACCGC pLX_317 16.4% 81.5% 79.2% V5 (many diffs) n/a
4 ccsbBroadEn_11276 pDONR223 100% 73.7% 69.5% None (many diffs) n/a
5 ccsbBroad304_11276 pLX_304 0% 73.7% 69.5% V5 (many diffs) n/a
6 TRCN0000475529 TAGCAGGGTTTTGGCGTATTCCCC pLX_317 9.9% 73.7% 69.5% V5 (many diffs) n/a
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