Transcript: Human XM_011516710.3

PREDICTED: Homo sapiens centrosomal protein 41 (CEP41), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEP41 (95681)
Length:
3499
CDS:
126..1142

Additional Resources:

NCBI RefSeq record:
XM_011516710.3
NBCI Gene record:
CEP41 (95681)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516710.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216193 CAACGTACACATAGCTTTAAT pLKO.1 2784 3UTR 100% 15.000 21.000 N Cep41 n/a
2 TRCN0000143499 GCTTACAGTTACCCAATTGCA pLKO.1 594 CDS 100% 3.000 4.200 N CEP41 n/a
3 TRCN0000144293 CCATGTTAGATGGACAGAAAT pLKO.1 1976 3UTR 100% 13.200 10.560 N CEP41 n/a
4 TRCN0000142809 CCCTACCAGCTGAGAATAAAT pLKO.1 898 CDS 100% 15.000 10.500 N CEP41 n/a
5 TRCN0000142857 CCCTGAGCAGTTCATAAACAA pLKO.1 383 CDS 100% 5.625 3.938 N CEP41 n/a
6 TRCN0000121830 GAACAATGAACCCTTATTCAA pLKO.1 625 CDS 100% 5.625 3.938 N CEP41 n/a
7 TRCN0000139119 CAGGACCAATGGGAAAGGAAA pLKO.1 341 CDS 100% 4.950 3.465 N CEP41 n/a
8 TRCN0000143244 GCGTGATAGAGATTCTTACCA pLKO.1 554 CDS 100% 3.000 2.100 N CEP41 n/a
9 TRCN0000140855 CGGAAGGACTGATTACTGGTT pLKO.1 805 CDS 100% 2.640 1.848 N CEP41 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516710.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13007 pDONR223 100% 71.3% 71.3% None 0_1ins105;653_868del n/a
2 ccsbBroad304_13007 pLX_304 0% 71.3% 71.3% V5 0_1ins105;653_868del n/a
3 TRCN0000480131 CCTTCTGCGCGAGTCCACAGGTCC pLX_317 42.5% 71.3% 71.3% V5 0_1ins105;653_868del n/a
Download CSV