Transcript: Human XM_011517738.2

PREDICTED: Homo sapiens tRNA methyltransferase 10B (TRMT10B), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRMT10B (158234)
Length:
3573
CDS:
66..821

Additional Resources:

NCBI RefSeq record:
XM_011517738.2
NBCI Gene record:
TRMT10B (158234)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434644 GACAGATTCGAAGGTTGTATG pLKO_005 310 CDS 100% 10.800 15.120 N TRMT10B n/a
2 TRCN0000414329 TAGTTACCTGTTAGACATAAC pLKO_005 434 CDS 100% 10.800 15.120 N TRMT10B n/a
3 TRCN0000034855 GCTCTTGAAGATGTTGATCTA pLKO.1 522 CDS 100% 4.950 3.960 N TRMT10B n/a
4 TRCN0000415525 GAAGACTGCTTTAGTTTATTT pLKO_005 459 CDS 100% 15.000 10.500 N TRMT10B n/a
5 TRCN0000413624 ACGCTTGCCAATCCAGGAATA pLKO_005 635 CDS 100% 10.800 7.560 N TRMT10B n/a
6 TRCN0000034858 GTCAGAAACCAGAATGGGAAA pLKO.1 660 CDS 100% 4.050 2.835 N TRMT10B n/a
7 TRCN0000034854 GCCATCAATCAAGTGTTTGAT pLKO.1 702 CDS 100% 0.563 0.394 N TRMT10B n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1368 3UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1369 3UTR 100% 13.200 6.600 Y LIAS n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05094 pDONR223 100% 72.3% 72.3% None 1_39del;224_225ins234 n/a
2 ccsbBroad304_05094 pLX_304 0% 72.3% 72.3% V5 1_39del;224_225ins234 n/a
3 TRCN0000470516 ATCAGACTAACCGAGGATTAATAC pLX_317 47% 72.3% 72.3% V5 1_39del;224_225ins234 n/a
Download CSV