Transcript: Human XM_011518420.2

PREDICTED: Homo sapiens ATP/GTP binding protein 1 (AGTPBP1), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AGTPBP1 (23287)
Length:
7738
CDS:
4553..7168

Additional Resources:

NCBI RefSeq record:
XM_011518420.2
NBCI Gene record:
AGTPBP1 (23287)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518420.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000275417 AGCAATGCCAGAGTCTAATTA pLKO_005 6166 CDS 100% 15.000 21.000 N AGTPBP1 n/a
2 TRCN0000073904 CCGGATTTACATCCTACAATT pLKO.1 6446 CDS 100% 13.200 18.480 N AGTPBP1 n/a
3 TRCN0000073905 CCGAATTACATTGCAGAATAT pLKO.1 5092 CDS 100% 13.200 10.560 N AGTPBP1 n/a
4 TRCN0000285392 TATACCATGGAGAGTACTTTA pLKO_005 6782 CDS 100% 13.200 10.560 N AGTPBP1 n/a
5 TRCN0000073906 GCCTCCATTCAAAGAGCCTAT pLKO.1 5455 CDS 100% 4.050 3.240 N AGTPBP1 n/a
6 TRCN0000275476 CATGACCCAGACCTCTATATT pLKO_005 5360 CDS 100% 15.000 10.500 N AGTPBP1 n/a
7 TRCN0000275418 TTTATCTCCCTATGGTTATAT pLKO_005 7445 3UTR 100% 15.000 10.500 N AGTPBP1 n/a
8 TRCN0000073907 CCTCCATTCAAAGAGCCTATT pLKO.1 5456 CDS 100% 10.800 7.560 N AGTPBP1 n/a
9 TRCN0000073903 CCTGAGTATCATTGCATGAAT pLKO.1 7423 3UTR 100% 5.625 3.938 N AGTPBP1 n/a
10 TRCN0000031456 CCAGACCTCTATATTGAGATT pLKO.1 5366 CDS 100% 4.950 3.465 N Agtpbp1 n/a
11 TRCN0000354231 CCAGACCTCTATATTGAGATT pLKO_005 5366 CDS 100% 4.950 3.465 N Agtpbp1 n/a
12 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 2302 5UTR 100% 10.800 5.400 Y MRPS16 n/a
13 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 2302 5UTR 100% 10.800 5.400 Y CD3EAP n/a
14 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 2138 5UTR 100% 4.950 2.475 Y C16orf89 n/a
15 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 2171 5UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518420.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02745 pDONR223 100% 73.3% 72.8% None (many diffs) n/a
2 ccsbBroad304_02745 pLX_304 0% 73.3% 72.8% V5 (many diffs) n/a
3 TRCN0000467358 GCAACTTTACACCAATTTTGTATC pLX_317 11.7% 73.3% 72.8% V5 (many diffs) n/a
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