Transcript: Human XM_011526975.1

PREDICTED: Homo sapiens luteinizing hormone subunit beta (LHB), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LHB (3972)
Length:
597
CDS:
36..509

Additional Resources:

NCBI RefSeq record:
XM_011526975.1
NBCI Gene record:
LHB (3972)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011526975.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083464 CCCAGTGTGCATCACCGTCAA pLKO.1 212 CDS 100% 1.350 0.810 N LHB n/a
2 TRCN0000083465 CCCATCAATGCCATCCTGGCT pLKO.1 174 CDS 100% 0.220 0.132 N LHB n/a
3 TRCN0000083463 CCTTCCCTGTGGCTCTCAGCT pLKO.1 385 CDS 100% 0.000 0.000 N LHB n/a
4 TRCN0000088875 CGCCGCAGCACCTCTGACTGT pLKO.1 423 CDS 100% 0.000 0.000 N Cgb n/a
5 TRCN0000369665 ATCACCGTCAACACCACCATC pLKO_005 222 CDS 100% 4.050 2.025 Y CGB7 n/a
6 TRCN0000256847 TCACCGTCAACACCACCATCT pLKO_005 223 CDS 100% 4.050 2.025 Y CGB8 n/a
7 TRCN0000262693 ACCGTCAACACCACCATCTGT pLKO_005 225 CDS 100% 3.000 1.500 Y CGB5 n/a
8 TRCN0000082825 CATCACCGTCAACACCACCAT pLKO.1 221 CDS 100% 2.640 1.320 Y CGB3 n/a
9 TRCN0000244627 GATGTGCGCTTCGAGTCCATC pLKO_005 324 CDS 100% 1.350 0.675 Y CGB7 n/a
10 TRCN0000256850 ATGTGCGCTTCGAGTCCATCC pLKO_005 325 CDS 100% 0.750 0.375 Y CGB8 n/a
11 TRCN0000377340 TGTTGCTGCTGCTGAGCATGG pLKO_005 109 CDS 100% 0.750 0.375 Y CGB8 n/a
12 TRCN0000242876 AGTCCATCCGGCTCCCTGGCT pLKO_005 337 CDS 100% 0.000 0.000 Y CGB1 n/a
13 TRCN0000083467 CACCACCATCTGTGCCGGCTA pLKO.1 233 CDS 100% 0.000 0.000 Y LHB n/a
14 TRCN0000242638 CACCATCTGTGCCGGCTACTG pLKO_005 236 CDS 100% 0.000 0.000 Y CGB2 n/a
15 TRCN0000369594 CCACCATCTGTGCCGGCTACT pLKO_005 235 CDS 100% 0.000 0.000 Y CGB7 n/a
16 TRCN0000083466 GCGCTTCGAGTCCATCCGGCT pLKO.1 329 CDS 100% 0.000 0.000 Y LHB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011526975.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09361 pDONR223 100% 71% 60.7% None (many diffs) n/a
2 ccsbBroad304_09361 pLX_304 0% 71% 60.7% V5 (many diffs) n/a
3 TRCN0000467261 GATAACGAAGTGCTTTGCGACCGT pLX_317 83.3% 71% 60.7% V5 (many diffs) n/a
4 ccsbBroadEn_04608 pDONR223 100% 70.9% 60.7% None (many diffs) n/a
5 ccsbBroad304_04608 pLX_304 0% 70.9% 60.7% V5 (many diffs) n/a
6 TRCN0000469909 AAGTGTAGATATCACGCCGCTCGG pLX_317 77.4% 70.9% 60.7% V5 (many diffs) n/a
7 ccsbBroadEn_05987 pDONR223 100% 70.9% 60.7% None (many diffs) n/a
8 ccsbBroad304_05987 pLX_304 0% 70.9% 60.7% V5 (many diffs) n/a
9 TRCN0000479508 AGGTGCAAGGTGGAACATCCGCTA pLX_317 39.4% 70.9% 60.7% V5 (many diffs) n/a
10 ccsbBroadEn_13032 pDONR223 100% 70% 16.9% None (many diffs) n/a
11 ccsbBroad304_13032 pLX_304 0% 70% 16.9% V5 (many diffs) n/a
12 TRCN0000478100 ATGCTTCTTACTTAGTGCGTGGCG pLX_317 81.6% 70% 16.9% V5 (many diffs) n/a
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