Transcript: Human XM_011527522.2

PREDICTED: Homo sapiens zinc finger protein 264 (ZNF264), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF264 (9422)
Length:
6012
CDS:
415..2202

Additional Resources:

NCBI RefSeq record:
XM_011527522.2
NBCI Gene record:
ZNF264 (9422)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527522.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234863 CCTCATTCGACATGCCATTAT pLKO_005 1893 CDS 100% 13.200 18.480 N ZNF264 n/a
2 TRCN0000019143 ACCTCATTCGACATGCCATTA pLKO.1 1892 CDS 100% 10.800 15.120 N ZNF264 n/a
3 TRCN0000234861 GATAGAGTCCGTAGCCATAAC pLKO_005 856 CDS 100% 10.800 15.120 N ZNF264 n/a
4 TRCN0000234862 TGGCCAAGTCTTTCGACATAG pLKO_005 1278 CDS 100% 10.800 8.640 N ZNF264 n/a
5 TRCN0000019140 CCTCTGCATCTGATCAACCAT pLKO.1 2147 CDS 100% 3.000 2.400 N ZNF264 n/a
6 TRCN0000234865 GTCATCTGAAGAGTCATATTA pLKO_005 2231 3UTR 100% 15.000 10.500 N ZNF264 n/a
7 TRCN0000019142 GAGCCCTGAATGTGATGGTTT pLKO.1 780 CDS 100% 4.950 3.465 N ZNF264 n/a
8 TRCN0000019139 CCAGGCTTTCTCCGGCACTAT pLKO.1 1300 CDS 100% 1.650 1.155 N ZNF264 n/a
9 TRCN0000234864 GTAACCACTGAGGCAAATATT pLKO_005 2107 CDS 100% 15.000 9.000 N ZNF264 n/a
10 TRCN0000234230 ACTGGAGAGAAGCCCTATAAA pLKO_005 1918 CDS 100% 15.000 7.500 Y EG666702 n/a
11 TRCN0000019141 TCAGGTAAAGATCCCATGATT pLKO.1 886 CDS 100% 5.625 2.813 Y ZNF264 n/a
12 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 5311 3UTR 100% 4.950 2.475 Y DENND6A n/a
13 TRCN0000107803 GCGGATTCATAGTGGAGAGAA pLKO.1 1824 CDS 100% 4.950 2.475 Y ZNF805 n/a
14 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3831 3UTR 100% 5.625 2.813 Y KLHL30 n/a
15 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 3758 3UTR 100% 4.950 2.475 Y n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3831 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527522.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07414 pDONR223 100% 94.7% 94.5% None 159_160ins96;446G>C;452G>A n/a
2 ccsbBroad304_07414 pLX_304 0% 94.7% 94.5% V5 159_160ins96;446G>C;452G>A n/a
3 TRCN0000466958 TGCTAACGTTGTCCTTGTTTGCCC pLX_317 18.3% 94.7% 94.5% V5 159_160ins96;446G>C;452G>A n/a
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