Transcript: Human XM_011531620.2

PREDICTED: Homo sapiens casein kappa (CSN3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CSN3 (1448)
Length:
902
CDS:
149..697

Additional Resources:

NCBI RefSeq record:
XM_011531620.2
NBCI Gene record:
CSN3 (1448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011531620.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371984 TTACTCCACCTACGGCATAAA pLKO_005 678 CDS 100% 13.200 18.480 N CSN3 n/a
2 TRCN0000074579 GCCTCGCACATATTATGCAAA pLKO.1 376 CDS 100% 4.950 6.930 N CSN3 n/a
3 TRCN0000371929 AGACCAGCTATAGCAATTAAT pLKO_005 344 CDS 100% 15.000 10.500 N CSN3 n/a
4 TRCN0000074578 GCTGAAACCAAATTACTACTT pLKO.1 737 3UTR 100% 4.950 3.465 N CSN3 n/a
5 TRCN0000074581 TGTGCCAAATAGCTATCCTTA pLKO.1 298 CDS 100% 4.950 3.465 N CSN3 n/a
6 TRCN0000074580 CCTGGCATTAACCCTGCCTTT pLKO.1 178 CDS 100% 4.050 2.835 N CSN3 n/a
7 TRCN0000074582 GAATGATGAAAGACCATTCTA pLKO.1 244 CDS 100% 0.563 0.394 N CSN3 n/a
8 TRCN0000377812 CCAAACCTGCATCCATCATTT pLKO_005 479 CDS 100% 13.200 6.600 Y CSN3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011531620.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06054 pDONR223 100% 99.6% 99.4% None 6G>A;224A>G n/a
2 ccsbBroad304_06054 pLX_304 0% 99.6% 99.4% V5 6G>A;224A>G n/a
3 TRCN0000473763 GCGATCGGTAATAGCTCCCTTCGT pLX_317 85.8% 99.6% 99.4% V5 6G>A;224A>G n/a
Download CSV