Transcript: Human XM_011538798.3

PREDICTED: Homo sapiens unc-51 like autophagy activating kinase 1 (ULK1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ULK1 (8408)
Length:
5057
CDS:
47..3268

Additional Resources:

NCBI RefSeq record:
XM_011538798.3
NBCI Gene record:
ULK1 (8408)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001145850 GACCCCGAGCTTGGGTACGA pXPR_003 GGG 882 27% 12 0.7022 ULK1 ULK1 75737
2 BRDN0001145044 GGCAGCGTCCGGTTTCGAGG pXPR_003 GGG 2037 63% 20 0.3806 ULK1 ULK1 75736
3 BRDN0001147908 CCACCCAGTTCCAAACACCT pXPR_003 CGG 1368 42% 16 0.1732 ULK1 ULK1 75738
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011538798.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000196948 GCCCTGGATACGTCTTGTAAT pLKO.1 4012 3UTR 100% 13.200 18.480 N ULK1 n/a
2 TRCN0000000835 GCCCTTTGCGTTATATTGTAT pLKO.1 5001 3UTR 100% 5.625 7.875 N ULK1 n/a
3 TRCN0000000839 TACACGCCATCTCCTCAAGTT pLKO.1 1619 CDS 100% 4.950 6.930 N ULK1 n/a
4 TRCN0000352773 TACACGCCATCTCCTCAAGTT pLKO_005 1619 CDS 100% 4.950 6.930 N ULK1 n/a
5 TRCN0000000838 ACATCGAGAACGTCACCAAGT pLKO.1 3192 CDS 100% 4.050 5.670 N ULK1 n/a
6 TRCN0000342643 ACATCGAGAACGTCACCAAGT pLKO_005 3192 CDS 100% 4.050 5.670 N ULK1 n/a
7 TRCN0000368734 CTTCCAGGAAATGGCTAATTC pLKO_005 286 CDS 100% 13.200 9.240 N Ulk1 n/a
8 TRCN0000000836 CAAGTGCATTAACAAGAAGAA pLKO.1 181 CDS 100% 4.950 3.465 N ULK1 n/a
9 TRCN0000195342 CAGGCTGAATGAGCTGTACAA pLKO.1 2926 CDS 100% 4.950 3.465 N ULK1 n/a
10 TRCN0000195477 CGCATGGACTTCGATGAGTTT pLKO.1 842 CDS 100% 4.950 3.465 N ULK1 n/a
11 TRCN0000342594 CGCATGGACTTCGATGAGTTT pLKO_005 842 CDS 100% 4.950 3.465 N ULK1 n/a
12 TRCN0000000837 CCTGGTTATGGAGTACTGCAA pLKO.1 313 CDS 100% 2.640 1.848 N ULK1 n/a
13 TRCN0000199173 CGTGGGCAAGTTCGAGTTCTC pLKO.1 76 CDS 100% 1.350 0.945 N ULK1 n/a
14 TRCN0000199801 GCGCCTGTTCTACGAGAAGAA pLKO.1 733 CDS 100% 4.950 2.475 Y ULK1 n/a
15 TRCN0000342593 GCGCCTGTTCTACGAGAAGAA pLKO_005 733 CDS 100% 4.950 2.475 Y ULK1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011538798.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.