Transcript: Human XM_011544268.2

PREDICTED: Homo sapiens tumor protein p53 binding protein 2 (TP53BP2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TP53BP2 (7159)
Length:
4304
CDS:
328..3531

Additional Resources:

NCBI RefSeq record:
XM_011544268.2
NBCI Gene record:
TP53BP2 (7159)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011544268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000370371 AGTGTTTGAATAAGCGTAATT pLKO_005 1010 CDS 100% 13.200 18.480 N TP53BP2 n/a
2 TRCN0000303474 GTCTAGTAAATAGGATCATTT pLKO_005 3823 3UTR 100% 13.200 18.480 N TP53BP2 n/a
3 TRCN0000061793 CCCAACTAAATTACTGCCTTT pLKO.1 2238 CDS 100% 4.050 5.670 N TP53BP2 n/a
4 TRCN0000303475 GAAATCCAGAATCCATATTTA pLKO_005 2500 CDS 100% 15.000 10.500 N TP53BP2 n/a
5 TRCN0000303407 ACTAAGGAACAGCGCTTAAAG pLKO_005 595 CDS 100% 13.200 9.240 N TP53BP2 n/a
6 TRCN0000303473 GAGCTTGATCGCCTCTATAAG pLKO_005 928 CDS 100% 13.200 9.240 N TP53BP2 n/a
7 TRCN0000370316 TCAGGAGAAGATGGGCATAAT pLKO_005 3294 CDS 100% 13.200 9.240 N TP53BP2 n/a
8 TRCN0000061797 GCCTTTCTTATCTAATCCTTA pLKO.1 2253 CDS 100% 4.950 3.465 N TP53BP2 n/a
9 TRCN0000061796 GCAGTCATGGATAAGCGTGTT pLKO.1 1039 CDS 100% 4.050 2.835 N TP53BP2 n/a
10 TRCN0000315702 GCAGTCATGGATAAGCGTGTT pLKO_005 1039 CDS 100% 4.050 2.835 N TP53BP2 n/a
11 TRCN0000061794 CCTTAATGATAAGGAGGGATA pLKO.1 3447 CDS 100% 0.405 0.284 N TP53BP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011544268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000492340 GACTCGCTTAACAACAAAGGAATC pLX_317 12.5% 97.9% 97.2% V5 (not translated due to prior stop codon) 1_61del;87_88insGGTA n/a
2 TRCN0000488733 CCCGCACGCAAACTACATTCGTCA pLX_317 10.9% 94.1% 94.1% V5 (not translated due to prior stop codon) 1_186del n/a
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