Transcript: Human XM_017000247.2

PREDICTED: Homo sapiens GA binding protein transcription factor subunit beta 2 (GABPB2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GABPB2 (126626)
Length:
2545
CDS:
875..2269

Additional Resources:

NCBI RefSeq record:
XM_017000247.2
NBCI Gene record:
GABPB2 (126626)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000247.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431255 ATCGAGATGTCGTAGAGTTAC pLKO_005 1269 CDS 100% 10.800 15.120 N GABPB2 n/a
2 TRCN0000421467 TATGCAAGGGCCACAATTTGC pLKO_005 2270 CDS 100% 4.950 6.930 N GABPB2 n/a
3 TRCN0000005660 GCCTCACACTAGAGTTTCCAT pLKO.1 2230 CDS 100% 3.000 4.200 N GABPB2 n/a
4 TRCN0000428565 TTAACCTCGCAAGCCTTATTT pLKO_005 1497 CDS 100% 15.000 12.000 N GABPB2 n/a
5 TRCN0000005661 GCAGCCCAATGGAGTTGATTT pLKO.1 2107 CDS 100% 13.200 9.240 N GABPB2 n/a
6 TRCN0000435840 GAGAAGTTGCCACTAACAAAG pLKO_005 1904 CDS 100% 10.800 7.560 N GABPB2 n/a
7 TRCN0000010959 GCAATGCAGAATCAGGTGAAT pLKO.1 1397 CDS 100% 4.950 3.465 N GABPB2 n/a
8 TRCN0000005659 GCCAAGATGATGAAGTGAGAA pLKO.1 924 CDS 100% 4.950 3.465 N GABPB2 n/a
9 TRCN0000418163 ATTTGCACTGTGTTCATATTA pLKO_005 2285 3UTR 100% 15.000 9.000 N GABPB2 n/a
10 TRCN0000438667 CATCGTGGAACTGCTTGTTAG pLKO_005 1177 CDS 100% 10.800 8.640 N Gabpb2 n/a
11 TRCN0000055014 GCCAGCCATTTATTGTAACTA pLKO.1 1806 CDS 100% 5.625 3.938 N Gabpb2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000247.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04817 pDONR223 100% 96.5% 96.5% None 108_155del n/a
2 ccsbBroad304_04817 pLX_304 0% 96.5% 96.5% V5 108_155del n/a
3 TRCN0000467065 CAGCGACGATACGTCTCCGCGCAG pLX_317 30.4% 96.5% 96.5% V5 108_155del n/a
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