Transcript: Human XM_017001244.2

PREDICTED: Homo sapiens potassium voltage-gated channel subfamily D member 3 (KCND3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCND3 (3752)
Length:
7780
CDS:
398..2365

Additional Resources:

NCBI RefSeq record:
XM_017001244.2
NBCI Gene record:
KCND3 (3752)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001244.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434610 TTCCAACTTTAGCCGGATTTA pLKO_005 1606 CDS 100% 13.200 18.480 N KCND3 n/a
2 TRCN0000045021 CGTCGTAGTAAGAAGACCACA pLKO.1 2042 CDS 100% 2.640 3.696 N KCND3 n/a
3 TRCN0000432598 ACCACTGGGTTGTCCTATCTT pLKO_005 1853 CDS 100% 5.625 3.938 N KCND3 n/a
4 TRCN0000045022 CGACAACGACTCGGAGAACAA pLKO.1 844 CDS 100% 4.950 3.465 N KCND3 n/a
5 TRCN0000045020 CCAGCAATGTTGTCAAGGTCT pLKO.1 2334 CDS 100% 2.640 1.848 N KCND3 n/a
6 TRCN0000045019 CCCTGTTATCTGTACGAACCT pLKO.1 1884 CDS 100% 2.640 1.848 N KCND3 n/a
7 TRCN0000045018 CCAGAATCAGAGAGCTGATAA pLKO.1 1630 CDS 100% 1.320 0.924 N KCND3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001244.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06475 pDONR223 100% 97% 97% None 1462_1518del n/a
2 ccsbBroad304_06475 pLX_304 0% 97% 97% V5 1462_1518del n/a
3 ccsbBroadEn_15486 pDONR223 0% 97% 97% None 1122G>T;1462_1518del n/a
4 ccsbBroad304_15486 pLX_304 0% 97% 97% V5 1122G>T;1462_1518del n/a
5 TRCN0000472207 TAACCCGTTACCCGTCAGACCCAT pLX_317 14.3% 97% 97% V5 1122G>T;1462_1518del n/a
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