Transcript: Human XM_017002123.1

PREDICTED: Homo sapiens STIL centriolar assembly protein (STIL), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STIL (6491)
Length:
4875
CDS:
156..3878

Additional Resources:

NCBI RefSeq record:
XM_017002123.1
NBCI Gene record:
STIL (6491)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017002123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434653 TCAAGTTCAAGGGACTTATAA pLKO_005 689 CDS 100% 15.000 12.000 N STIL n/a
2 TRCN0000428252 ATGGATGAAACACGCAAATTG pLKO_005 726 CDS 100% 13.200 10.560 N STIL n/a
3 TRCN0000417269 GAGATATGGACTCCTACAAAG pLKO_005 3386 CDS 100% 10.800 8.640 N STIL n/a
4 TRCN0000416959 ATTCAGCCTTCTCCATATTAA pLKO_005 3290 CDS 100% 15.000 10.500 N STIL n/a
5 TRCN0000423565 CAGATAGCAAGAGTGAATATT pLKO_005 3448 CDS 100% 15.000 10.500 N STIL n/a
6 TRCN0000198100 CGTCATGCTAAGCAGAATAAA pLKO.1 354 CDS 100% 15.000 10.500 N Stil n/a
7 TRCN0000426925 GCAACCTTCTGAAACGCTAAA pLKO_005 3782 CDS 100% 10.800 7.560 N STIL n/a
8 TRCN0000003970 GTCTGGAATTACACATATCTA pLKO.1 806 CDS 100% 5.625 3.938 N STIL n/a
9 TRCN0000003966 GATCAGTTATTCCTACAAGTT pLKO.1 4108 3UTR 100% 4.950 3.465 N STIL n/a
10 TRCN0000003968 TGGATTAAACTGCATGTCATT pLKO.1 3128 CDS 100% 4.950 3.465 N STIL n/a
11 TRCN0000003969 CCAGGAACAGTATTAAACCAT pLKO.1 1567 CDS 100% 3.000 2.100 N STIL n/a
12 TRCN0000003967 CCTTTGATTAACCACTTGGAA pLKO.1 1374 CDS 100% 3.000 2.100 N STIL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017002123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.