Transcript: Human XM_017006359.1

PREDICTED: Homo sapiens LHFPL tetraspan subfamily member 4 (LHFPL4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LHFPL4 (375323)
Length:
5418
CDS:
825..1568

Additional Resources:

NCBI RefSeq record:
XM_017006359.1
NBCI Gene record:
LHFPL4 (375323)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017006359.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427372 CAAACCTTGGGAGGGTCTAAT pLKO_005 1757 3UTR 100% 13.200 18.480 N LHFPL4 n/a
2 TRCN0000437128 ACGGCTACGGTCTACAAGATC pLKO_005 1185 CDS 100% 4.950 6.930 N LHFPL4 n/a
3 TRCN0000164533 CAAGCCGGAGAACAAAGATTT pLKO.1 1451 CDS 100% 13.200 9.240 N LHFPL4 n/a
4 TRCN0000166651 CAGGATCACAGCCCAGTAATT pLKO.1 1574 3UTR 100% 13.200 9.240 N LHFPL4 n/a
5 TRCN0000164698 CTCAAGCCGGAGAACAAAGAT pLKO.1 1449 CDS 100% 5.625 3.938 N LHFPL4 n/a
6 TRCN0000166793 CATCTGCTTCGCCATCATCAA pLKO.1 914 CDS 100% 4.950 3.465 N LHFPL4 n/a
7 TRCN0000165378 GAAGACCCTGATCTCAGACTT pLKO.1 1654 3UTR 100% 4.950 3.465 N LHFPL4 n/a
8 TRCN0000164884 GCTGCATGATCTTTCCTGATG pLKO.1 1249 CDS 100% 4.050 2.835 N LHFPL4 n/a
9 TRCN0000140585 GCCATCTTCACCATCTGCTTT pLKO.1 903 CDS 100% 4.950 2.475 Y LHFPL3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017006359.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13636 pDONR223 100% 93.9% 93.9% None 1_45del n/a
2 ccsbBroad304_13636 pLX_304 0% 93.9% 93.9% V5 1_45del n/a
3 TRCN0000465624 GGTTGCTTGTGCATCGGCGCTTCT pLX_317 43.3% 93.9% 93.9% V5 1_45del n/a
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