Transcript: Human XM_017016013.2

PREDICTED: Homo sapiens inositol polyphosphate multikinase (IPMK), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IPMK (253430)
Length:
5924
CDS:
379..1365

Additional Resources:

NCBI RefSeq record:
XM_017016013.2
NBCI Gene record:
IPMK (253430)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017016013.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219804 GGTCAGCAAGTACCCATTAAT pLKO.1 606 CDS 100% 15.000 21.000 N IPMK n/a
2 TRCN0000196885 GCACCTTTAATGCTATGTAAA pLKO.1 1429 3UTR 100% 13.200 18.480 N IPMK n/a
3 TRCN0000195137 CAGAAGTACTAGAGTACAATA pLKO.1 971 CDS 100% 13.200 10.560 N IPMK n/a
4 TRCN0000052602 CAGACTTCATTGAAAGTTGAA pLKO.1 1108 CDS 100% 4.950 3.960 N IPMK n/a
5 TRCN0000196360 GATATGTTTATGGGCTAAAGC pLKO.1 1307 CDS 100% 4.950 3.960 N IPMK n/a
6 TRCN0000052598 GCCCTGTATAATGGATGTAAA pLKO.1 531 CDS 100% 13.200 9.240 N IPMK n/a
7 TRCN0000052600 GCAAGTTCATTACTCTTTGTT pLKO.1 862 CDS 100% 5.625 3.938 N IPMK n/a
8 TRCN0000219805 GGGTGGGCCAATCATAATGAA pLKO.1 1390 3UTR 100% 5.625 3.938 N IPMK n/a
9 TRCN0000052601 GCACCAAACGATTTATACCTA pLKO.1 478 CDS 100% 3.000 2.100 N IPMK n/a
10 TRCN0000052599 GCAACACAATAGATGAGGGAT pLKO.1 1289 CDS 100% 2.640 1.848 N IPMK n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017016013.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15293 pDONR223 0% 78.4% 77.8% None (many diffs) n/a
2 ccsbBroad304_15293 pLX_304 0% 78.4% 77.8% V5 (many diffs) n/a
3 TRCN0000470544 TGCAACACAGGTACACGGGACACC pLX_317 34.6% 78.4% 77.8% V5 (many diffs) n/a
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