Transcript: Human XM_017017989.2

PREDICTED: Homo sapiens t-complex 11 like 1 (TCP11L1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TCP11L1 (55346)
Length:
8641
CDS:
319..1863

Additional Resources:

NCBI RefSeq record:
XM_017017989.2
NBCI Gene record:
TCP11L1 (55346)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017017989.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000275740 CGTCCGATCCTAACGTGTATG pLKO_005 1851 CDS 100% 10.800 15.120 N TCP11L1 n/a
2 TRCN0000130627 CCTACTACGATGCAATCCTGA pLKO.1 1820 CDS 100% 2.640 3.696 N TCP11L1 n/a
3 TRCN0000129700 CGATTCCAAAGGGAAGAATAT pLKO.1 1975 3UTR 100% 13.200 10.560 N TCP11L1 n/a
4 TRCN0000129246 CGAATCCTGACCTTCTTAGAA pLKO.1 1666 CDS 100% 5.625 4.500 N TCP11L1 n/a
5 TRCN0000127846 GCAGGATCATGGAATCTCGAA pLKO.1 1649 CDS 100% 2.640 2.112 N TCP11L1 n/a
6 TRCN0000275741 TTTGTTAGAAGGGCTATATAA pLKO_005 2315 3UTR 100% 15.000 10.500 N TCP11L1 n/a
7 TRCN0000130168 CCGATTCCAAAGGGAAGAATA pLKO.1 1974 3UTR 100% 13.200 9.240 N TCP11L1 n/a
8 TRCN0000275798 GCTCGCCTGGTCAACTATAAC pLKO_005 1783 CDS 100% 13.200 9.240 N TCP11L1 n/a
9 TRCN0000200624 CCTGGTCAACTATAACAAGAT pLKO.1 1788 CDS 100% 4.950 3.465 N Tcp11l1 n/a
10 TRCN0000129802 CTAGCCCATGAAATTGTAGTA pLKO.1 550 CDS 100% 4.950 3.465 N TCP11L1 n/a
11 TRCN0000129646 CTGAGAAACCAGATAACAGAA pLKO.1 772 CDS 100% 4.950 3.465 N TCP11L1 n/a
12 TRCN0000275799 CTGAGAAACCAGATAACAGAA pLKO_005 772 CDS 100% 4.950 3.465 N TCP11L1 n/a
13 TRCN0000129136 GCTGGAGGAAGTTGCTATTAA pLKO.1 1758 CDS 100% 15.000 9.000 N TCP11L1 n/a
14 TRCN0000275800 GCTGGAGGAAGTTGCTATTAA pLKO_005 1758 CDS 100% 15.000 9.000 N TCP11L1 n/a
15 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 6060 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
16 TRCN0000139826 CCTCCTGAATAGCTGGGATTA pLKO.1 4517 3UTR 100% 10.800 5.400 Y SYNPO2 n/a
17 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 3141 3UTR 100% 4.950 2.475 Y NPHS1 n/a
18 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 7157 3UTR 100% 4.950 2.475 Y DENND6A n/a
19 TRCN0000191863 GCCCATGAAATTGTAGTAACT pLKO.1 553 CDS 100% 4.950 3.465 N Tcp11l1 n/a
20 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 6035 3UTR 100% 2.640 1.320 Y LINC01098 n/a
21 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 3308 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017017989.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08528 pDONR223 100% 98.8% 98.6% None (many diffs) n/a
2 ccsbBroad304_08528 pLX_304 0% 98.8% 98.6% V5 (many diffs) n/a
3 TRCN0000475928 ACATGGGCCGCACTATCAACGCCA pLX_317 17.2% 98.8% 98.6% V5 (many diffs) n/a
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