Construct: ORF ccsbBroadEn_08528

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012408.1_s300c1, BRDN0000456518
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCP11L1 (55346)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55346 TCP11L1 t-complex 11 like 1 NM_001145541.1 99.8% 99.8% 216T>C;533A>G;1488C>A
2 human 55346 TCP11L1 t-complex 11 like 1 NM_018393.4 99.8% 99.8% 216T>C;533A>G;1488C>A
3 human 55346 TCP11L1 t-complex 11 like 1 XM_011520207.2 99.8% 99.8% 216T>C;533A>G;1488C>A
4 human 55346 TCP11L1 t-complex 11 like 1 XM_017017990.1 99.8% 99.8% 216T>C;533A>G;1488C>A
5 human 55346 TCP11L1 t-complex 11 like 1 XM_011520204.2 98.8% 98.6% (many diffs)
6 human 55346 TCP11L1 t-complex 11 like 1 XM_011520205.2 98.8% 98.6% (many diffs)
7 human 55346 TCP11L1 t-complex 11 like 1 XM_011520206.2 98.8% 98.6% (many diffs)
8 human 55346 TCP11L1 t-complex 11 like 1 XM_017017989.2 98.8% 98.6% (many diffs)
9 human 55346 TCP11L1 t-complex 11 like 1 XM_017017991.1 63.5% 63.6% 0_1ins555;933C>A
10 human 55346 TCP11L1 t-complex 11 like 1 XM_017017992.1 63.5% 63.6% 0_1ins555;933C>A
11 human 55346 TCP11L1 t-complex 11 like 1 XR_001747920.2 15.3% (many diffs)
12 mouse 320554 Tcp11l1 t-complex 11 like 1 NM_177190.5 85.3% 85% (many diffs)
13 mouse 320554 Tcp11l1 t-complex 11 like 1 XM_006499734.3 85.3% 85% (many diffs)
14 mouse 320554 Tcp11l1 t-complex 11 like 1 XM_006499735.3 73.8% 74.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1596
ORF length:
1527
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGAAAAC CTTGACAAGT CCAATGTAAA TGAAGCAGGA AAATCAAAAT
121CCAATGATTC TGAGGAAGGC CTCGAAGATG CTGTGGAAGG TGCTGATGAA GCCTTACAAA
181AAGCAATAAA GTCAGACTCC TCCAGCCCCC AAAGAGTGCA GAGACCTCAC TCTAGTCCTC
241CTCGCTTTGT GACAGTAGAA GAACTTCTAG AGACAGCGAG AGGCGTCACC AACATGGCTC
301TAGCCCATGA AATTGTAGTA AATGGAGACT TTCAGATTAA ACCAGTTGAA TTACCAGAAA
361ACAGCTTGAA GAAGAGAGTA AAGGAGATTG TACATAAAGC GTTTTGGGAT TGCTTGAGTG
421TGCAGCTAAG TGAAGATCCC CCAGCATATG ACCATGCTAT CAAACTTGTA GGAGAAATCA
481AAGAGACTCT CTTATCTTTC TTGCTGCCTG GTCATACTAG ACTGAGAAAC CAGATAACAG
541AAGTCTTGGA TCTGGATCTG ATAAAGCAGG AAGCAGAGAA TGGGGCGCTA GACATTTCCA
601GGCTGGCAGA ATTCATTATT GGCATGATGG GGACACTGTG TGCACCTGCT CGAGATGAGG
661AAGTTAAGAA ACTAAAGGAC ATTAAGGAAA TAGTGCCCCT TTTCAGAGAA ATTTTTTCTG
721TGTTGGACCT AATGAAAGTG GACATGGCCA ACTTTGCTAT CAGTAGCATC AGGCCTCATC
781TCATGCAGCA GTCAGTTGAA TACGAAAGGA AGAAGTTTCA AGAGATTTTG GAGAGGCAAC
841CAAATTCCCT GGACTTTGTC ACCCAGTGGC TGGAAGAAGC CTCAGAGGAC CTTATGACTC
901AGAAGTATAA ACACGCCCTG CCAGTGGGGG GAATGGCTGC TGGCTCTGGG GACATGCCCA
961GGCTGAGCCC TGTTGCTGTC CAGAATTACG CTTACCTGAA GCTTCTGAAG TGGGACCACC
1021TCCAGAGGCC GTTCCCCGAA ACAGTTTTAA TGGACCAGTC TCGCTTCCAC GAGCTCCAGT
1081TGCAGCTGGA ACAACTGACC ATCCTGGGGG CTGTGTTGCT GGTCACCTTC AGCATGGCAG
1141CGCCAGGAAT TTCCAGCCAG GCCGACTTTG CTGAGAAACT CAAGATGATT GTGAAGATTT
1201TGCTAACAGA TATGCACCTG CCCTCCTTCC ATCTGAAGGA CGTCCTCACT ACCATCGGGG
1261AGAAGGTGTG CCTGGAGGTG AGCAGCTGCC TCTCCCTGTG TGGGTCCTCT CCCTTCACCA
1321CGGACAAGGA GACCGTGCTC AAGGGCCAGA TCCAGGCCGT GGCCAGTCCC GATGACCCCA
1381TTCGCAGGAT CATGGAATCT CGAATCCTGA CCTTCTTAGA AACCTACCTT GCCTCGGGTC
1441ATCAGAAGCC ATTGCCCACA GTCCCTGGGG GACTCAGTCC AGTTCAGAGA GAGCTGGAGG
1501AAGTTGCTAT TAAATTTGCT CGCCTGGTCA ACTATAACAA GATGGTCTTC TGTCCATACT
1561ACGATGCAAT CCTGAGTAAG ATCCTCGTCC GATCCTTGCC AACTTTCTTG TACAAAGTTG
1621Gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)