Transcript: Human XM_017022350.1

PREDICTED: Homo sapiens transient receptor potential cation channel subfamily M member 7 (TRPM7), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRPM7 (54822)
Length:
7086
CDS:
16..5700

Additional Resources:

NCBI RefSeq record:
XM_017022350.1
NBCI Gene record:
TRPM7 (54822)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022350.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379560 GCAGATCTGCTAGCGTATATT pLKO_005 1006 CDS 100% 15.000 21.000 N TRPM7 n/a
2 TRCN0000196778 GCTATGAAATTGCTCACTTAT pLKO.1 2155 CDS 100% 13.200 18.480 N TRPM7 n/a
3 TRCN0000021559 CGGGAGGAAATTGTTTGGTAA pLKO.1 5768 3UTR 100% 4.950 6.930 N TRPM7 n/a
4 TRCN0000318776 CGGGAGGAAATTGTTTGGTAA pLKO_005 5768 3UTR 100% 4.950 6.930 N TRPM7 n/a
5 TRCN0000021560 GCCCGATATTATTTCCACTAT pLKO.1 1071 CDS 100% 4.950 6.930 N TRPM7 n/a
6 TRCN0000318837 GCCCGATATTATTTCCACTAT pLKO_005 1071 CDS 100% 4.950 6.930 N TRPM7 n/a
7 TRCN0000195091 CAAGAGATGATAAGCTGTTTA pLKO.1 6943 3UTR 100% 13.200 9.240 N TRPM7 n/a
8 TRCN0000380327 GCGCTTTCCTTATCCACTTAA pLKO_005 1890 CDS 100% 13.200 9.240 N TRPM7 n/a
9 TRCN0000021562 CCACCAAAGAATCAGAATCAA pLKO.1 5654 CDS 100% 5.625 3.938 N TRPM7 n/a
10 TRCN0000318839 CCACCAAAGAATCAGAATCAA pLKO_005 5654 CDS 100% 5.625 3.938 N TRPM7 n/a
11 TRCN0000021561 GCCAATATGTTCTACATTGTA pLKO.1 3034 CDS 100% 5.625 3.938 N TRPM7 n/a
12 TRCN0000318838 GCCAATATGTTCTACATTGTA pLKO_005 3034 CDS 100% 5.625 3.938 N TRPM7 n/a
13 TRCN0000021563 CGGATGCTTATGGAGTCATAA pLKO.1 308 CDS 100% 1.320 0.924 N TRPM7 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022350.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15081 pDONR223 25.9% 95.1% 11.9% None (many diffs) n/a
2 ccsbBroad304_15081 pLX_304 0% 95.1% 11.9% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV