Transcript: Human XM_017022672.2

PREDICTED: Homo sapiens multiple EGF like domains 11 (MEGF11), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MEGF11 (84465)
Length:
11920
CDS:
569..3703

Additional Resources:

NCBI RefSeq record:
XM_017022672.2
NBCI Gene record:
MEGF11 (84465)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022672.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154867 GCTGAATCCCTACACCAAGAT pLKO.1 3061 CDS 100% 4.950 6.930 N MEGF11 n/a
2 TRCN0000152025 CCATCAAATTACAACAGCCAA pLKO.1 4234 3UTR 100% 2.640 3.696 N MEGF11 n/a
3 TRCN0000155706 CCAAGAAGGTTGCGGTCATAA pLKO.1 3562 CDS 100% 13.200 9.240 N MEGF11 n/a
4 TRCN0000154565 GCCATCCTTGTCGACATCTAA pLKO.1 3502 CDS 100% 5.625 3.938 N MEGF11 n/a
5 TRCN0000152584 GTCCATCTGTAGCTGTAACAA pLKO.1 1909 CDS 100% 5.625 3.938 N MEGF11 n/a
6 TRCN0000150867 GCAGCTATGTAGAAATGAAGT pLKO.1 3447 CDS 100% 4.950 3.465 N MEGF11 n/a
7 TRCN0000119473 GCTATGTGAGTGCATGAACAA pLKO.1 2950 CDS 100% 4.950 3.465 N Megf11 n/a
8 TRCN0000119474 GAACACATACATTATGGACAA pLKO.1 3304 CDS 100% 4.050 2.835 N Megf11 n/a
9 TRCN0000156151 CTTTCCTGGATGGATTGGCAA pLKO.1 2620 CDS 100% 2.640 1.848 N MEGF11 n/a
10 TRCN0000154065 CCAGCTATATCCAGAATGCAT pLKO.1 3585 CDS 100% 3.000 1.800 N MEGF11 n/a
11 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 6614 3UTR 100% 4.950 2.475 Y CFLAR n/a
12 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 6614 3UTR 100% 4.950 2.475 Y C19orf31 n/a
13 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 11299 3UTR 100% 4.050 2.025 Y Mtif2 n/a
14 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 6612 3UTR 100% 4.950 2.475 Y ERN2 n/a
15 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 6612 3UTR 100% 4.950 2.475 Y P3H4 n/a
16 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 6612 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022672.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.