Transcript: Human XM_017025871.2

PREDICTED: Homo sapiens CUGBP Elav-like family member 4 (CELF4), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CELF4 (56853)
Length:
1813
CDS:
178..1155

Additional Resources:

NCBI RefSeq record:
XM_017025871.2
NBCI Gene record:
CELF4 (56853)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017025871.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074404 CTGCTGCCTATGGTCAGATAA pLKO.1 956 CDS 100% 13.200 9.240 N CELF4 n/a
2 TRCN0000098600 CCTTTGACATATCAGCCAATA pLKO.1 1278 3UTR 100% 10.800 7.560 N Celf4 n/a
3 TRCN0000437506 GTGCGCCTTTGTGAAGTACTC pLKO_005 357 CDS 100% 4.050 2.835 N CELF4 n/a
4 TRCN0000423355 ACAAACCTCTCTCTATATATA pLKO_005 1230 3UTR 100% 15.000 9.000 N CELF4 n/a
5 TRCN0000098602 CTGCTGCCTATGGTCAGATTA pLKO.1 956 CDS 100% 13.200 9.240 N Celf4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017025871.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12306 pDONR223 100% 66.6% 66.1% None (many diffs) n/a
2 ccsbBroad304_12306 pLX_304 0% 66.6% 66.1% V5 (many diffs) n/a
3 TRCN0000475751 TGGTAACTGTAACCCGAGGTCTCG pLX_317 17.5% 66.6% 66.1% V5 (many diffs) n/a
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