Construct: ORF TRCN0000475022
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008612.1_s317c1
- Derived from:
- ccsbBroadEn_04470
- DNA Barcode:
- CACGAGTAATAAGGAGATGGGGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM241 (85019)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475022
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 85019 | TMEM241 | transmembrane protein 241 | NM_032933.6 | 100% | 100% | |
| 2 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026045.1 | 91.2% | 91.2% | 278_279ins78 |
| 3 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_011526233.2 | 89.6% | 89.6% | 763_864del |
| 4 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026043.1 | 82.4% | 79.9% | (many diffs) |
| 5 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026044.2 | 82.2% | 79.7% | (many diffs) |
| 6 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_935259.1 | 62.6% | (many diffs) | |
| 7 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_935260.1 | 60.7% | (many diffs) | |
| 8 | human | 85019 | TMEM241 | transmembrane protein 241 | NM_001318834.1 | 58.6% | 57% | (many diffs) |
| 9 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026049.1 | 58.6% | 57% | (many diffs) |
| 10 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026050.1 | 58.6% | 57% | (many diffs) |
| 11 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026051.1 | 58.6% | 57% | (many diffs) |
| 12 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026046.1 | 47.8% | 44% | (many diffs) |
| 13 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_017026047.1 | 47.8% | 44% | (many diffs) |
| 14 | human | 85019 | TMEM241 | transmembrane protein 241 | XM_024451277.1 | 47.8% | 44% | (many diffs) |
| 15 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753294.1 | 40.4% | (many diffs) | |
| 16 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148383.1 | 27.8% | 1_117del;188_189ins47;959_2977del | |
| 17 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134877.1 | 27.7% | 1_117del;599_600ins46;960_2992del | |
| 18 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134875.1 | 27.6% | 1_117del;550_551ins49;957_2989del | |
| 19 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148385.1 | 26.6% | 1_117del;313_314ins82;924_2942del | |
| 20 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148384.1 | 26.1% | (many diffs) | |
| 21 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148382.1 | 25.2% | 1_117del;185_186ins125;881_2899del | |
| 22 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753289.1 | 22.3% | 1_107del;996_3972del | |
| 23 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753288.1 | 15.9% | 1_107del;996_5552del | |
| 24 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753292.2 | 15.6% | 1_100del;482_596del;1104_5660del | |
| 25 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753287.1 | 15.3% | 1_107del;872_1011del;1136_5773del | |
| 26 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753293.1 | 14.8% | (many diffs) | |
| 27 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753290.2 | 13.6% | (many diffs) | |
| 28 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753291.1 | 12.8% | 1_107del;539_540ins166;830_5467del | |
| 29 | mouse | 338363 | Tmem241 | transmembrane protein 241 | NM_001289666.1 | 85.8% | 81.8% | (many diffs) |
| 30 | mouse | 338363 | Tmem241 | transmembrane protein 241 | NM_178801.5 | 81.5% | 76.7% | (many diffs) |
| 31 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526053.3 | 73.4% | 70% | (many diffs) |
| 32 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526056.3 | 69.8% | 65.7% | (many diffs) |
| 33 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526057.3 | 68.6% | 61.3% | (many diffs) |
| 34 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526054.3 | 67.1% | 60.4% | (many diffs) |
| 35 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526059.3 | 65.4% | 62.1% | (many diffs) |
| 36 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XR_385999.3 | 57.3% | (many diffs) | |
| 37 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526062.3 | 57.1% | 54.9% | (many diffs) |
| 38 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XR_386003.3 | 56.3% | (many diffs) | |
| 39 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XR_386000.3 | 56% | (many diffs) | |
| 40 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_011246967.2 | 52.6% | 48.8% | (many diffs) |
| 41 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_006526063.3 | 50.6% | 48.5% | (many diffs) |
| 42 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XR_877136.2 | 44% | (many diffs) | |
| 43 | mouse | 338363 | Tmem241 | transmembrane protein 241 | XM_011246969.2 | 35% | 29.8% | (many diffs) |
| 44 | mouse | 338363 | Tmem241 | transmembrane protein 241 | NR_110356.1 | 23.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 957
- ORF length:
- 888
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtgcgtgagg aggtctctgg tcggcctcac cttttgtacc tgctacctgg 121 cttcttacct cacgaacaag tatgtgctgt ctgtcttgaa atttacctac cctacattat 181 tccaagggtg gcagacgctc attggtggac ttttgcttca tgtgtcctgg aaactgggct 241 gggtagagat caacagcagt tcaagatctc atgttcttgt gtggcttcct gcttcagtgc 301 tgtttgtggg tataatctat gctgggtcca gagcattgtc cagactggcc attcctgtgt 361 ttctcacttt gcataatgta gctgaagtta tcatctgtgg gtaccagaag tgttttcaga 421 aagagaaaac atctcctgca aagatctgta gtgccctcct ccTCCTGGCC GCAGCAGGAT 481 GCCTTCCCTT CAATGACTCC CAGTTTAATC CAGATGGATA TTTTTGGGCT ATAATTCACT 541 TACTCTGTGT AGGGGCTTAT AAAATTCTAC AGAAGTCCCA GAAACCCAGT GCATTAAGTG 601 ACATTGACCA GCAATACTTA AACTATATAT TCAGTGTGGT GCTCCTGGCA TTTGCATCTC 661 ATCCCACAGG TGATCTCTTC AGCGTCCTGG ACTTCCCATT CCTGTACTTC TACAGATTCC 721 ATGGTAGCTG CTGTGCCAGT GGATTTTTGG GATTCTTTCT CATGTTCAGT ACAGTGAAGC 781 TAAAAAACCT TCTGGCCCCA GGGCAGTGTG CAGCCTGGAT TTTCTTTGCT AAGATAATCA 841 CAGCTGGCTT ATCAATATTG CTGTTTGATG CGATCCTGAC CAGTGCAACC ACGGGATGCC 901 TCCTGCTCGG TGCGCTTGGA GAGGCCTTGC TGGTTTTCTC AGAGCGGAAG AGCTCCTTGC 961 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 1021 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 1081 ATATATCTTG TGGAAAGGAC GACACGAGTA ATAAGGAGAT GGGGTTACGC GTTAAGTCga 1141 caatcaacct ctggattaca aaatttgtga aagatt